View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12160_low_8 (Length: 408)
Name: NF12160_low_8
Description: NF12160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12160_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 11 - 374
Target Start/End: Original strand, 11781489 - 11781852
Alignment:
| Q |
11 |
cagagacacacagtgaggcaaccgtagcatgaggaagccgtgagtgagccaacaacttagaaaccggggttgccaattctgcctgccaatcaaacatggc |
110 |
Q |
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| T |
11781489 |
cagagacacacagcgaggcaaccatagcatgaggaagccgtgagtgagccaacaacttagaaaccggggttgccaattctgcctgccaatcaaacatggc |
11781588 |
T |
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| Q |
111 |
aagaccggctgcgaaggaatcaaattaagaagtaaaccgagcaagcacggagaaacgatcgcgatgccatagttatgtttcacgatgcaaattgaataag |
210 |
Q |
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| T |
11781589 |
aagaatggctgcgaaggaatcaaattaagaagcaaaccgagcaagcacggagaaacgatcgcgatgccacagttatgtttcacgatgcaaattgaataag |
11781688 |
T |
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| Q |
211 |
caccaaacaagaaatgaacaagcttatccaaatttgaaatcaatggaaaaagcccctaccctaattcaattttggagaatgattggcaccaatagttgag |
310 |
Q |
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| T |
11781689 |
caccaaacaagaaatgaacaagcttatccaaatttgaaatcaatggaaaaagcccctgccgtaattcaattttggagaatgattggcaccaatagttgag |
11781788 |
T |
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| Q |
311 |
ttgtgaagctattccacttttcctatgtcgtttgtagttgagtgaaacgagtggaaagagtgaa |
374 |
Q |
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| T |
11781789 |
ttgtgaagctattccacttttcctatgtcgtttgtagttgagtgaaacgagtagaaaaagtgaa |
11781852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 26181698 - 26181666
Alignment:
| Q |
81 |
tgccaattctgcctgccaatcaaacatggcaag |
113 |
Q |
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| T |
26181698 |
tgccaattctgcctgccaatcaaacatggcaag |
26181666 |
T |
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