View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12161_high_1 (Length: 403)
Name: NF12161_high_1
Description: NF12161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12161_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 7961239 - 7961435
Alignment:
| Q |
1 |
taaaaccaacaactatacaacagtcctcacagtccttagtattgctatttcaaaattgttagaattgttttccttgaccatttcaaaattcttgcccacc |
100 |
Q |
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| T |
7961239 |
taaaaccaacaactatacaacagtcctcacagtccttagtattgctatttcaaaattgttagaattgttttccttgaccatttcaaaattcttgcccacc |
7961338 |
T |
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| Q |
101 |
cctatatacaaccacctaatcatatgggaaagtttcataattgaagcatgccatcaaaatatgtaactaccgtgtcaattgtatttcaaaatcaaat |
197 |
Q |
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| T |
7961339 |
cctatatacaaccacctaatcatatgggaaagtttcataattgaagcatgccatcaaaatatgtaactaccgtgtcaattgtatttcaaaatcaaat |
7961435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 139 - 384
Target Start/End: Original strand, 7971312 - 7971557
Alignment:
| Q |
139 |
aattgaagcatgccatcaaaatatgtaactaccgtgtcaattgtatttcaaaatcaaatcattaaattgcatcactggacaacacactcttctcaagatt |
238 |
Q |
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| T |
7971312 |
aattgaagcatgccatcaaaatatgtaactactgtgtcaattgtatttcaaaatcaaatcattaaattgcttcacaagacaacacactcttctcaagatt |
7971411 |
T |
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| Q |
239 |
gagttgcctgaaagagaagaaacaaataaaacccagaaagagatttttaccctatcttccttctgtagcgttgagagtattaataaactgtttataagat |
338 |
Q |
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| T |
7971412 |
gagttgcccgaaagagaagaaacaaaaaaaacccagaaagagatttttgccatatcttccttctgtagctttgaaagtattaataacctgtttataaaat |
7971511 |
T |
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| Q |
339 |
gcagagaagggagaaaccaaatgcaatagtaataaactgtgcttaa |
384 |
Q |
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| T |
7971512 |
gcagagaagggagaaaacaaatgcaaaagtaataacctgtgcttaa |
7971557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 7970118 - 7970199
Alignment:
| Q |
62 |
gaattgttttccttgaccatttcaaaattcttgcccacccctatatacaaccacctaatcatatgggaaagtttcataattg |
143 |
Q |
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| T |
7970118 |
gaattgttttccttgactattccaaaattcttgcccacccctatatacaaccaagtaatcatattggaaagtgtcataattg |
7970199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 312 - 384
Target Start/End: Original strand, 7961438 - 7961510
Alignment:
| Q |
312 |
agagtattaataaactgtttataagatgcagagaagggagaaaccaaatgcaatagtaataaactgtgcttaa |
384 |
Q |
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|||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
7961438 |
agagaattaataacctgtttataaaatgcagagaagggagaaaccaaatgcaatagtattaacctgtgcttaa |
7961510 |
T |
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