View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12161_high_2 (Length: 376)

Name: NF12161_high_2
Description: NF12161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12161_high_2
NF12161_high_2
[»] chr2 (5 HSPs)
chr2 (19-265)||(40030418-40030664)
chr2 (19-129)||(30905630-30905740)
chr2 (19-129)||(30916333-30916443)
chr2 (19-129)||(30925466-30925576)
chr2 (191-223)||(30925375-30925407)
[»] chr8 (7 HSPs)
chr8 (19-100)||(29255484-29255565)
chr8 (19-97)||(29248857-29248935)
chr8 (19-129)||(29211076-29211186)
chr8 (19-163)||(29228098-29228242)
chr8 (19-103)||(29236003-29236087)
chr8 (196-240)||(29255661-29255705)
chr8 (19-103)||(29280736-29280820)


Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 40030418 - 40030664
Alignment:
Q  19 ccaaatgggtagtggatattttccagaagagggttatggaaaagcttcatattttagaaatatacaagttgtagattctgataacaagtttattccgttg 118  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40030418 ccaaatgggtagtggacattttccagatgagggttatggaaaagcttcatattttagaaatatacaagttgtagattctgataacaagtttattccgttg 40030517  T
Q  119 ccaaatgtcaaatatcaggcagagcacccaaactgttataatataattggaggagttagtaaccagggtgataatttcttttactatggtggacctggaa 218  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  40030518 ccaaatgtcaaatatcaggcggagcacccaaactgttataatataattggaggagttagtaaccagggtcagaatttcttttactatggtggacctggaa 40030617  T
Q  219 agaatgtaaactgtccctaattcaaaattcgagttataaaggtcaac 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  40030618 agaatgtaaactgtccctaattcaaaattcgagttataaaggtcaac 40030664  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 30905740 - 30905630
Alignment:
Q  19 ccaaatgggtagtggatattttccagaagagggttatggaaaagcttcatattttagaaatatacaagttgtagattctgataacaagtttattccgttg 118  Q
    |||||||||||||||| ||||| |||| ||| ||| |  |||||||||||||||||  ||||| ||||||||  |||||||||||||||| ||||| |||    
T  30905740 ccaaatgggtagtggacattttgcagatgagcgttcttcaaaagcttcatattttaagaatatgcaagttgtgaattctgataacaagttgattccattg 30905641  T
Q  119 ccaaatgtcaa 129  Q
     ||||| ||||    
T  30905640 tcaaatctcaa 30905630  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 30916443 - 30916333
Alignment:
Q  19 ccaaatgggtagtggatattttccagaagagggttatggaaaagcttcatattttagaaatatacaagttgtagattctgataacaagtttattccgttg 118  Q
    |||||||||||||||| ||||| |||| ||||||| |  ||||||||||  |||||| ||| ||||||||||  |||||||||||||||| ||||| |||    
T  30916443 ccaaatgggtagtggacattttgcagatgagggtttttcaaaagcttcactttttaggaatttacaagttgtgaattctgataacaagttgattccattg 30916344  T
Q  119 ccaaatgtcaa 129  Q
     ||||| ||||    
T  30916343 tcaaatctcaa 30916333  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 30925576 - 30925466
Alignment:
Q  19 ccaaatgggtagtggatattttccagaagagggttatggaaaagcttcatattttagaaatatacaagttgtagattctgataacaagtttattccgttg 118  Q
    |||||||||||||||| ||||| | || ||||||| |  ||||||||||||||||||  |||| ||||||||  |||| ||||||||||| ||||| |||    
T  30925576 ccaaatgggtagtggacattttgctgatgagggttcttcaaaagcttcatattttagggatatgcaagttgtgaattccgataacaagttgattccattg 30925477  T
Q  119 ccaaatgtcaa 129  Q
     ||||| ||||    
T  30925476 tcaaatctcaa 30925466  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 30925407 - 30925375
Alignment:
Q  191 aatttcttttactatggtggacctggaaagaat 223  Q
    |||| ||||||||||||||||||||||||||||    
T  30925407 aattacttttactatggtggacctggaaagaat 30925375  T

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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 29255484 - 29255565
Alignment:
Q  19 ccaaatgggtagtggatattttccagaagagggttatggaaaagcttcatattttagaaatatacaagttgtagattctgat 100  Q
    |||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||| |||||||| | |||||||    
T  29255484 ccaaatgggtagtggacattttgctgaagagggttatggaaaagcttcatattttagaaatatgcaagttgtgggttctgat 29255565  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 29248857 - 29248935
Alignment:
Q  19 ccaaatgggtagtggatattttccagaagagggttatggaaaagcttcatattttagaaatatacaagttgtagattct 97  Q
    |||||||||||||||| ||||| | || ||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  29248857 ccaaatgggtagtggacattttgctgaggagggttatggaaaagcttcatattttagaaatatgcaagttgtaggttct 29248935  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 29211186 - 29211076
Alignment:
Q  19 ccaaatgggtagtggatattttccagaagagggttatggaaaagcttcatattttagaaatatacaagttgtagattctgataacaagtttattccgttg 118  Q
    |||||||||||||||| ||||| | |||||||||| || ||||||| |||| ||||| ||||| |||||||| |||||||||||||  || ||||| |||    
T  29211186 ccaaatgggtagtggacattttgctgaagagggttttgcaaaagctgcatactttaggaatatgcaagttgtggattctgataacagcttgattcccttg 29211087  T
Q  119 ccaaatgtcaa 129  Q
    |||||| ||||    
T  29211086 ccaaatctcaa 29211076  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 29228098 - 29228242
Alignment:
Q  19 ccaaatgggtagtggatattttccagaagagggttatggaaaagcttcatattttagaaatatacaagttgtagattctgataacaagtttattccgttg 118  Q
    ||||||||| |||||| ||||| | || ||||||| | ||||||| |||||| |||||||||||||||||   | |||||||||||| ||  |||| |||    
T  29228098 ccaaatggggagtggacattttgccgaggagggttttagaaaagcgtcatatattagaaatatacaagtttggggttctgataacaacttggttccattg 29228197  T
Q  119 ccaaatgtcaaatatcaggcagagcacccaaactgttataatata 163  Q
     ||||| |||| | |   |||||||| ||||| ||||||||||||    
T  29228198 tcaaatctcaagtttaccgcagagcaaccaaattgttataatata 29228242  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 29236003 - 29236087
Alignment:
Q  19 ccaaatgggtagtggatattttccagaagagggttatggaaaagcttcatattttagaaatatacaagttgtagattctgataac 103  Q
    |||||||||||||||| ||||| | || |||  ||||||||||||| |||||||||  ||| | ||||||||  | |||||||||    
T  29236003 ccaaatgggtagtggacattttgctgaggagaattatggaaaagctgcatattttaagaatttgcaagttgtgaaatctgataac 29236087  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 29255661 - 29255705
Alignment:
Q  196 cttttactatggtggacctggaaagaatgtaaactgtccctaatt 240  Q
    ||||||||||||||||||||||| |||| | || |||||||||||    
T  29255661 cttttactatggtggacctggaaggaatatgaaatgtccctaatt 29255705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 29280736 - 29280820
Alignment:
Q  19 ccaaatgggtagtggatattttccagaagagggttatggaaaagcttcatattttagaaatatacaagttgtagattctgataac 103  Q
    |||||||||||||||| ||||| | || |||  ||||||||||||| |||||||||  ||| | ||||||||  | |||||||||    
T  29280736 ccaaatgggtagtggacattttgctgaggagaattatggaaaagctgcatattttaagaatttgcaagttgtgaaatctgataac 29280820  T

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