View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12161_high_3 (Length: 286)

Name: NF12161_high_3
Description: NF12161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12161_high_3
NF12161_high_3
[»] chr7 (1 HSPs)
chr7 (3-286)||(37120528-37120812)


Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 3 - 286
Target Start/End: Original strand, 37120528 - 37120812
Alignment:
Q  3 gagcagaa-cctgtgccacccccggatgatgctgcgagtttgaatcagaacaatgatactggtgctgagttgggaggggatacccgcagggtgcaatccc 101  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37120528 gagcagaatcctgtgccacccccggatgatgctgcgagtttgaatcagaacaatgatactggtgctgagttgggaggggatacccgcagggtgcaatccc 37120627  T
Q  102 ttttgcttcgaagatcacaatcacatagagcaacactttcaactctttcatcagcacttacttctgctgaaaggttggttgaggcatatttccgtagcaa 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37120628 ttttgcttcgaagatcacaatcacatagagcaacactttcaactctttcatcagcacttacttctgctgaaaggttggttgaggcatatttccgtagcaa 37120727  T
Q  202 tccattgggcagaaaccaagaacaaccacctccttcaggtgatgacagggattcattttcaagcattgctgctgtcataaattcc 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37120728 tccattgggcagaaaccaagaacaaccacctccttcaggtgatgacagggattccttttcaagcattgctgctgtcataaattcc 37120812  T

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