View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12162_high_11 (Length: 349)
Name: NF12162_high_11
Description: NF12162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12162_high_11 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 42453314 - 42453662
Alignment:
| Q |
1 |
tagctactccatgtatcatccnnnnnnnctgccccattacctcccatttatcccggacataaacaaattcaattggctgatttaatttcgggaactattc |
100 |
Q |
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| T |
42453314 |
tagctactccatgtatcatccaaaaaaactgccccattacctcccatttatcccggacataaacaaattcaattggctgatttaatttcgggaactattc |
42453413 |
T |
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| Q |
101 |
acgatcaattctatcgggacaaatagcatcactcatgtgaaaaatgactccactgattattcatgaataatatagaagtattcaaccctttggacaacga |
200 |
Q |
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| T |
42453414 |
acgatc--ttctattgggacaaatagcatcactcatgtgaaaaatcactccactgattattcatgaataatatagaagtattcaaccctttggacaacga |
42453511 |
T |
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| Q |
201 |
tgaaacataatatggagctcacagtgctatgttctat--tattgtatatactatatacaccagtttagaaaacaaatattttactaaggttgttttgaag |
298 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42453512 |
tgaaacataatatggagctcacagtgctatgttctatgatattatatatactatatacaccagtttagaaaacaaatattttactaaagttgttttgaag |
42453611 |
T |
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| Q |
299 |
gaaacattttnnnnnnntaatataagaatcacttttacatcttgagaataa |
349 |
Q |
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| T |
42453612 |
gaaacattttaaaaaaataatataagaatcacttttacatcttgagaataa |
42453662 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 316 - 349
Target Start/End: Complemental strand, 24115602 - 24115569
Alignment:
| Q |
316 |
taatataagaatcacttttacatcttgagaataa |
349 |
Q |
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| T |
24115602 |
taatataagaatcacttttacatcttgagaataa |
24115569 |
T |
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