View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12162_high_17 (Length: 308)
Name: NF12162_high_17
Description: NF12162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12162_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 53679794 - 53679678
Alignment:
| Q |
111 |
gaacctgtgtgtatagatcttcttccctttcttctcttccatgtaaatccaaaaaccattcattcaacaatcttcacatatttctacttttcatgaaatc |
210 |
Q |
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| T |
53679794 |
gaacctgtgtgtatagatcttcttccctttcttctcttccatgtaaatccaaataccattcatttaacaatcttcacttatttctacttttcatgaaatc |
53679695 |
T |
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| Q |
211 |
atcattctcaatctccc |
227 |
Q |
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| T |
53679694 |
gtcattctcaatctccc |
53679678 |
T |
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Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 3855632 - 3855697
Alignment:
| Q |
30 |
gataggaggctgtctgtcaaagataaaggacttcgccattgatatataaagattataggcgtcttg |
95 |
Q |
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| T |
3855632 |
gataggaggctgtctgtcaaagataaaggacttcgccattgatatataaagattataggcgtcttg |
3855697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 32375198 - 32375255
Alignment:
| Q |
120 |
tgtatagatcttcttccctttcttctcttccatgtaaatccaaaaaccattcattcaa |
177 |
Q |
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| T |
32375198 |
tgtatggatcttcttccttttcttctcttctctgtaaatccaaatatcattcattcaa |
32375255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 182
Target Start/End: Original strand, 19266145 - 19266212
Alignment:
| Q |
115 |
ctgtgtgtatagatcttcttccctttcttctcttccatgtaaatccaaaaaccattcattcaacaatc |
182 |
Q |
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| T |
19266145 |
ctgtgtgtacggatcttcttccttttcttctcttctctgtaaatccaaattccattcattcaacaatc |
19266212 |
T |
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