View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12162_high_18 (Length: 308)
Name: NF12162_high_18
Description: NF12162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12162_high_18 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 9 - 308
Target Start/End: Original strand, 42026176 - 42026475
Alignment:
| Q |
9 |
gagatgaaagagtgtcccaaatgaaactgattaggggatggcagaagtaatgcacgcatgttaactggaagcagattagtgcaatgaccgcatctcacag |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42026176 |
gagaagaaagagtgtcccaaatgaaactgattaggggatggcagaagtaatgcacgcatgttgactggaagcagattagtgcaatgaccgcatctcacag |
42026275 |
T |
|
| Q |
109 |
tcacggtcttgaacaagcttgtgcaaggaacactcacctgaaaaaagatgaaggagaatcagttatatttgcataaaagaaaatggagaagaaaaaccct |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42026276 |
tcacggtcttgaacaagcttgtgcaaggaacactcacctgaaaaaagatgaaggagaatcagttatatttgcataaaagaaaatggagaagaaaaaccct |
42026375 |
T |
|
| Q |
209 |
agctaaggtagtgttggaaagtgagaaaaaatagtgatgtttcatacagcaaggatggtgtcacagatggtgcagtggacataacaaagttgctcggaag |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42026376 |
agctaaggtagtgttggaaagtgagaaaaaatagtgatgtttcatacagcaaggatggtgtcacagatggtgcagtggacataacaaagttgctcggaag |
42026475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 154
Target Start/End: Complemental strand, 8885917 - 8885823
Alignment:
| Q |
60 |
gcacgcatgttaactggaagcagattagtgcaatgaccgcatctcacagtcacggtcttgaacaagcttgtgcaaggaacactcacctgaaaaaa |
154 |
Q |
| |
|
|||||||||||||||| || || || ||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
8885917 |
gcacgcatgttaactgagagaaggttggtgcaatgaccacatctcactgtcacagtcttgaacaaacttgtgcaaggaacactcacctgagaaaa |
8885823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University