View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12162_high_2 (Length: 430)
Name: NF12162_high_2
Description: NF12162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12162_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 9 - 400
Target Start/End: Complemental strand, 9333597 - 9333203
Alignment:
| Q |
9 |
atataataatcatcatagaaataatgaacaaataaaacttttatctttagctacaataatctgctacaatttacatacaaacatatat------catcca |
102 |
Q |
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| T |
9333597 |
atataataatcatcatagaaataatgaacaaataaaacttttatctttagctacaataatctgctacaatttacatacaaacatatatatatatcatcca |
9333498 |
T |
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| Q |
103 |
ttagaaaatagtggatgaaaacatactataacaccaaaaatatataagtatgctactacaatttacatacaaactaataataattttctaataaatctta |
202 |
Q |
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| T |
9333497 |
ttagaaaatagtggatgaaaacatactataacaccaaaaatatataagtatgctac---aatttacatacaaactaataataattttctaataaatctta |
9333401 |
T |
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| Q |
203 |
ataaatatattcatagctcaaactcttcctggtggattggggtcatggtggttgtttgcacctgtccctggatagtcttctatttccaaattcatccttt |
302 |
Q |
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| T |
9333400 |
ataaatgtattcatagctcaaactcttcctggtggattggggtcatggtggttgtttgcacctgtccctggatagtcttctatttccaaattcatccttt |
9333301 |
T |
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| Q |
303 |
cttttaccatgaattcttctcctttataaaatgaatcttccccaatacttaatccagtaacattttcctattattgagaaaagctataataagttaga |
400 |
Q |
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| T |
9333300 |
cttttaccatgaattcttctcctttatcaaatgaatcttccccaatacttaatccagtaacattttcctattattgagaaaagctataataagttaga |
9333203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 181 - 400
Target Start/End: Complemental strand, 9335219 - 9335000
Alignment:
| Q |
181 |
aataattttctaataaatcttaataaatatattcatagctcaaactcttcctggtggattggggtcatggtggttgtttgcacctgtccctggatagtct |
280 |
Q |
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| T |
9335219 |
aataattttctaataaatcataaagaaattatgcatcactcaaactcttcctggtaccttaggatcatggtggttgtttgctcctgtccctggatagtct |
9335120 |
T |
|
| Q |
281 |
tctatttccaaattcatcctttcttttaccatgaattcttctcctttataaaatgaatcttccccaatacttaatccagtaacattttcctattattgag |
380 |
Q |
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|||||||||||||||||||||| ||||||| ||| ||||||| ||||| || ||||||| ||| |||| |||||| ||||| |||||||||||||| |
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| T |
9335119 |
tctatttccaaattcatccttttctttaccaagaactcttctcttttatccaacaaatcttctccattactaaatccaataacactttcctattattgac |
9335020 |
T |
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| Q |
381 |
aaaagctataataagttaga |
400 |
Q |
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| T |
9335019 |
aaaagctatattatgttaga |
9335000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 153
Target Start/End: Complemental strand, 9335321 - 9335242
Alignment:
| Q |
73 |
tacaatttacatacaaacatatatcatccattagaaaatagtggatgaaaacatactataacaccaaaaatatataagtat |
153 |
Q |
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|||||| ||||||||||| |||||| |||||| || || || |||||||||||||||||||||||| ||| || |||||| |
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| T |
9335321 |
tacaatctacatacaaactaatatcacccattaaaatat-gttgatgaaaacatactataacaccaataatgtacaagtat |
9335242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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