View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12162_high_3 (Length: 405)
Name: NF12162_high_3
Description: NF12162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12162_high_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 12 - 405
Target Start/End: Original strand, 5148311 - 5148718
Alignment:
| Q |
12 |
atgaaagcgaaagcatgtacttcctaggcccacattcaacttgatctttatctatactagactagatagatctcatacatcgactatactttttacagaa |
111 |
Q |
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| T |
5148311 |
atgaaagcgaacgcatgtacttcctaggcccacattcaacttgatctttatctatactagactagatagatctcatgcatcgactatactttttacagaa |
5148410 |
T |
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| Q |
112 |
caaattcaggtgagtttagatagtggagtaacaaaggtatttatatatatcatgcatgcatcaataagtttttatagtgaccacaagagtcgaattcaca |
211 |
Q |
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| T |
5148411 |
caaattcaggtgagtttagata--gctctaacaaaggtatt--tatatatcatgcatgcatcaataagtttttatagtgaccacaacagtcgaattcaca |
5148506 |
T |
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| Q |
212 |
catttacattgtatgcaggg-----------------cataggaaggtcatgacctcttcaaaatccgaaatgattttctctnnnnnnnnnnnnnntcca |
294 |
Q |
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| T |
5148507 |
catttacattgtatgcaggggcggagctatcgtaggacataggaaggtcatgacctcttcaaaatccgaaatgattttctct-caaaaaaaaaaaatcca |
5148605 |
T |
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| Q |
295 |
aaatgattttaaaatgata--tgtgtgtaaagatgatattttagctaaccgttttatgatcgtatggttgttttgtggtccggtggaaagtgagtgaaga |
392 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5148606 |
aaatgattttaaaatgatatgtgtgtgtaaagatgatattttagctaaccgttttatgatcgtatggttgttttgtggtccggtggaaagtgagtgaaga |
5148705 |
T |
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| Q |
393 |
cgcaagagaatag |
405 |
Q |
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| T |
5148706 |
cgcaagagaatag |
5148718 |
T |
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