View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12162_high_9 (Length: 359)
Name: NF12162_high_9
Description: NF12162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12162_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 25 - 352
Target Start/End: Complemental strand, 43611068 - 43610740
Alignment:
| Q |
25 |
atcaattcagctatgctcacgggacatc-atcatcttgcgattctttgaattaaatgtacgatattatgattatgaattacccatatattgacaaaatcc |
123 |
Q |
| |
|
||||||| || ||||||||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
43611068 |
atcaattgagttatgctcacgggacatccatcatcatgcgattctatgaattaaatgtatgatattatgattatgaattacacatatattgacaaaattc |
43610969 |
T |
|
| Q |
124 |
tcaatagattaacataatttatttgactagtttagaggtttggtttaacaaactactccttaatgtcataatttaccctaaattatttaagataatttca |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
43610968 |
tcaatagattaacataatttatttgactagtttagaggtttggtttaacaaattactccttaatgtcataatttatccttaattatttaagataatttca |
43610869 |
T |
|
| Q |
224 |
gagtaatttatgattgttcctcaccttcctaaacatagtggctcgcccaagaggaagacagaaccaattgtggcaattataaaactcagtggattccaag |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||| |
|
|
| T |
43610868 |
gagtaatttatgattgttcctcaccttcctaaacatagtggctcgcccaagagcaagacagaaccgattgtggcaattataaaactcattggggtccaag |
43610769 |
T |
|
| Q |
324 |
ttgctgggaaaactggtcctttcttctca |
352 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
43610768 |
ttgctgggaaaactggtcctttcttctca |
43610740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 184 - 345
Target Start/End: Complemental strand, 43617791 - 43617628
Alignment:
| Q |
184 |
taatgtcataat--ttaccctaaattatttaagataatttcagagtaatttatgattgttcctcaccttcctaaacatagtggctcgcccaagaggaaga |
281 |
Q |
| |
|
|||||||||||| ||| ||| |||||||| ||||| |||||||| ||||||||| || ||||||| |||||||| ||||||||||||||||| || | |
|
|
| T |
43617791 |
taatgtcataatatttatccttaattatttgtgataaattcagagttatttatgatggtaactcacctccctaaacacagtggctcgcccaagagcaaaa |
43617692 |
T |
|
| Q |
282 |
cagaaccaattgtggcaattataaaactcagtggattccaagttgctgggaaaactggtccttt |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43617691 |
cagaaccaattgtggcaattataaaactcagtggattccaagttgctgggaaaactggtccttt |
43617628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 243 - 352
Target Start/End: Complemental strand, 43604384 - 43604275
Alignment:
| Q |
243 |
ctcaccttcctaaacatagtggctcgcccaagaggaagacagaaccaattgtggcaattataaaactcagtggattccaagttgctgggaaaactggtcc |
342 |
Q |
| |
|
||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43604384 |
ctcacctccctaaacgtagtggctcacccaagaggaagacagaaccaattgtggcaattataaaactcagtggattccaagttgctgagaaaactggtcc |
43604285 |
T |
|
| Q |
343 |
tttcttctca |
352 |
Q |
| |
|
| |||||||| |
|
|
| T |
43604284 |
tctcttctca |
43604275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University