View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12163_high_2 (Length: 575)
Name: NF12163_high_2
Description: NF12163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12163_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 9 - 477
Target Start/End: Original strand, 47256932 - 47257400
Alignment:
| Q |
9 |
gaacctgtgcaaggtaataaccttagatctagcgatgcacctactagccctagaatatctttctcagcagagtttctagatgaaaacaacttcatctcta |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47256932 |
gaacctgttcaaggtaataaccttagatctagtgatgcacctactagccctagaatatctttctcagcagagtttctagatgaaaacaacttcatctcta |
47257031 |
T |
|
| Q |
109 |
ttagtccaaaccctctttacagaacagaaagagatcaagagaaggaacaacatgaaaaaacaaagaacacagatcagtttgagtttctttcaaacatcaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47257032 |
ttagtccaaaccctctttacagaacagaaagagatcaagagaaggaacaacatgaaaaaacaaagaacacagatcagtttgagtttctttcaaacatcaa |
47257131 |
T |
|
| Q |
209 |
cataagtgacaaaaacacagttttatcagctgatgaacttttctttgaaggaaaaatccttcccttttggcagatgcaacatctagagaaactcaacaag |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47257132 |
cataagtgacaaaaacacagttttatcagctgatgaacttttctttgaaggaaaaatccttcccttttggcagatgcaacatctagagaaactcaacaag |
47257231 |
T |
|
| Q |
309 |
atcaacctcaaagacgaagaggaggaggaagtgattgaggtggtagtggacaacaaagaagataataataatagtagagtaaattggtttgtggatgatg |
408 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47257232 |
atcaacctcaaagaagaagaagaggaggaagtgattgaggtggtagtggacaacaaagaagataataataatagtagagtaaattggtttgtggatgatg |
47257331 |
T |
|
| Q |
409 |
atccatcaccaaggccaccaaagtgcactgttttatggaaagagttactaaggttgaagaaacaaagag |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47257332 |
atccatcaccaaggccaccaaagtgcactgttttatggaaagagttactaaggttgaagaaacaaagag |
47257400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 521 - 560
Target Start/End: Original strand, 47257444 - 47257483
Alignment:
| Q |
521 |
gaatgggagttcgctcggcgatgtagctgctaaagaaggt |
560 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
47257444 |
gaatgggagttcgctcggtgatgtagctgctaaagaaggt |
47257483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University