View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12163_low_3 (Length: 345)
Name: NF12163_low_3
Description: NF12163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12163_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 12 - 328
Target Start/End: Original strand, 43024945 - 43025261
Alignment:
| Q |
12 |
aacctgtgtcagttaatggatagataggactagtaaaaaacttgtactttgagaggcgcaagaaaagactgcaactttatagtcttaagtgtacctattg |
111 |
Q |
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| T |
43024945 |
aacctgtttcagttaatggatagataggactagtaaaaaacttgtactttgagaggcgcaagaaaagactgcaactttatagtcttaagtgtacctattg |
43025044 |
T |
|
| Q |
112 |
aaaaagggaataccgatgaactctcttctgtcaccgtatgatttgaaaattttaattatgttgaattaaatatcaaccatgaaatacatataatatgcat |
211 |
Q |
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| T |
43025045 |
aaaaagggaataccgatgaactctcttctgtcaccgtatgatttgaaaattttaattatgttgaactaaatatcaaccatgaaatacatataatatgcat |
43025144 |
T |
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| Q |
212 |
gagcacgatattgcaaagacgaacactcagaacactcagaacttctataggacagacacctctaatcaaaggtgacagtgtcactacgctatctgacacc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43025145 |
gagcacgatattgcaaagacgaacactcagaacactcagaacttctataggacagacacctctaatcaaaggtgacagtgtcactacgctatctgacacc |
43025244 |
T |
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| Q |
312 |
gattacattcgattaat |
328 |
Q |
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||||||||||||||||| |
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| T |
43025245 |
gattacattcgattaat |
43025261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 70 - 176
Target Start/End: Original strand, 42814641 - 42814747
Alignment:
| Q |
70 |
caagaaaagactgcaactttatagtcttaagtgtacctattgaaaaagggaataccgatgaactctcttctgtcaccgtatgatttgaaaattttaatta |
169 |
Q |
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| T |
42814641 |
caagaaaagattgcaactttatagtctaaagtgtagttattgaaaaagggaatactgatgaactcccttccatcacagtatgatttgaaaattttaatta |
42814740 |
T |
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| Q |
170 |
tgttgaa |
176 |
Q |
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||||||| |
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| T |
42814741 |
tgttgaa |
42814747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 240 - 328
Target Start/End: Original strand, 35063718 - 35063807
Alignment:
| Q |
240 |
agaacactcagaacttctataggacagacacctctaatcaaaggtgacagtgtc-actacgctatctgacaccgattacattcgattaat |
328 |
Q |
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||||||| |||||| ||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||| ||||| |
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| T |
35063718 |
agaacacccagaacatctatagcacagacacctctaatcaaaggtgacagtgtctactacactatctgacacggattatattcggttaat |
35063807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 42814804 - 42814859
Alignment:
| Q |
239 |
cagaacactcagaacttctataggacagaca-cctctaatcaaaggtgacagtgtc |
293 |
Q |
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| T |
42814804 |
cagaacactcagaacttctatagcacagacaccctctaatcaaaggtgccagtgtc |
42814859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 35063601 - 35063697
Alignment:
| Q |
20 |
tcagttaatggatagataggactagtaaaaaacttgtactttgagaggcgcaagaaaagactgcaactttatagtcttaagtgtacctattgaaaaaggg |
119 |
Q |
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|||||||||| ||||||||||||| |||||| ||||||||| ||| ||||||| || |||||||||||||||| ||||||| ||||||||||| | |
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| T |
35063601 |
tcagttaatg-atagataggactactaaaaa-cttgtactt-----ggcacaagaaa-gagtgcaactttatagtctaaagtgtagttattgaaaaagag |
35063692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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