View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12163_low_4 (Length: 313)
Name: NF12163_low_4
Description: NF12163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12163_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 297
Target Start/End: Original strand, 3332358 - 3332636
Alignment:
| Q |
19 |
gtttgcgctgtcacgtgtgatgataatcggtggttttggtttgtttttggatccagctggtcttcctcttggtcttcttgtcattgaatcggtgtcgcca |
118 |
Q |
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| T |
3332358 |
gtttgcgctgtcacgtgtgatgataatcggtggttttggtttgtttttggatccagctggtcttcctcttggtcttcttgtcattgaatcggtgtcgcca |
3332457 |
T |
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| Q |
119 |
ccggaaccacctcctccggattctaacttggggctaaaatctgtgctgaacttgttgttgctgttttcttctcggtttgtgaggttgagtccaccgccgc |
218 |
Q |
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| T |
3332458 |
ccggaaccacctcctccggattctaacttggggctaaaatctgtgctgaacttgttgttgctgttttcttctcggtttgtgaggttgagtccaccgccgc |
3332557 |
T |
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| Q |
219 |
tgctacttccgctttgttcatcttgatctgtggtttgttgctgctgctgtaaagtgtggaattgatggtgttgttgttg |
297 |
Q |
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| T |
3332558 |
tgctacttccgctttgttcatcttgatctgtggtttgttgctgctgctgtaaagtgtggaattgatggtgttgttgttg |
3332636 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 13212832 - 13212894
Alignment:
| Q |
35 |
gtgatgataatcggtggttttggtttgtttttggatccagctggtcttcctcttggtcttctt |
97 |
Q |
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| T |
13212832 |
gtgatgatgataggtggttttggtttgtttttcgaacctgctggtcttcctcttggtcttctt |
13212894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 32803230 - 32803278
Alignment:
| Q |
47 |
ggtggttttggtttgtttttggatccagctggtcttcctcttggtcttc |
95 |
Q |
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| T |
32803230 |
ggtggttttggtctgtttttggatccaggtggtcttcctcttggtcttc |
32803278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 16578665 - 16578617
Alignment:
| Q |
47 |
ggtggttttggtttgtttttggatccagctggtcttcctcttggtcttc |
95 |
Q |
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| T |
16578665 |
ggtggttttggtttgttttttgaaccgggtggtcttcctcttggtcttc |
16578617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 95
Target Start/End: Original strand, 32809703 - 32809738
Alignment:
| Q |
60 |
tgtttttggatccagctggtcttcctcttggtcttc |
95 |
Q |
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| T |
32809703 |
tgtttttggatccaggtggtcttcctcttggtcttc |
32809738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 46200964 - 46200911
Alignment:
| Q |
34 |
tgtgatgataatcggtggttttggtttgtttttggatccagctggtcttcctct |
87 |
Q |
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| T |
46200964 |
tgtgatgataataggtggttttggtttgttttttgagccaggtggacgtcctct |
46200911 |
T |
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