View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12163_low_7 (Length: 249)
Name: NF12163_low_7
Description: NF12163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12163_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 38267721 - 38267483
Alignment:
| Q |
1 |
tcaggacgcagacaagtgattggttccatgttagctggggtgaggtagcactt-gtgtcttgtagttttgatttttgaatgttaagttagagagaggtga |
99 |
Q |
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| T |
38267721 |
tcaggacgcagacaagtgattggttccatgttagctggggtgaggtagcacttagtgtcttgtagttttgatttttgaatgttaagttagagagaggtga |
38267622 |
T |
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| Q |
100 |
cagaagcattcatgaagggataggtgaatatatagtactggttttggcagaaggaatgagatgatgttgaagtttaggctaactaaaggggctt---agg |
196 |
Q |
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| T |
38267621 |
cagaagcattcatgaaggggtaggtgaatatatagtactggttttggcagaaggaatgagatgatgttgaagtttaggctaactaaaggggcttaggagg |
38267522 |
T |
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| Q |
197 |
aatggtcaatcaccactaaccatgtggtaaatatgtttt |
235 |
Q |
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| T |
38267521 |
aatggtcaatcaccactaaccatgtggtaaatatgtttt |
38267483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 38311379 - 38311333
Alignment:
| Q |
126 |
aatatatagtactggttttggcagaaggaatgagatgatgttgaagt |
172 |
Q |
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| T |
38311379 |
aatatatagaactggttttggcagcgggaatgagataatgttgaagt |
38311333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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