View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12164_high_1 (Length: 1009)
Name: NF12164_high_1
Description: NF12164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12164_high_1 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 324 - 962
Target Start/End: Complemental strand, 775479 - 774871
Alignment:
| Q |
324 |
atgtttctggtacccttagcagcttacattctgtggcagcttctatacctcctcattgttaatgtcttgtgccgaaaacggcttttaagagatcctgaag |
423 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
775479 |
atgtttctggtacccttagcagcttacattatgtggcagcttctatacctcctcattgttaatgtcttgtgccgaaaacggcttttaagagatcctgaag |
775380 |
T |
|
| Q |
424 |
tcatgagttcctataggtaatcgactatcgcatacatatttccttcccnnnnnnngagttcataatagtaggaagaaggacgacaatagatagagtcaag |
523 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
775379 |
tcatgacttcctataggtaatcaactatcgcatacatatttccttccctttttttgagttcataatagtaggaagagggacgacaatagatagagtcgag |
775280 |
T |
|
| Q |
524 |
ataggtactgtaaaaatgacttgtattattgtatataatcaaactgacttttgtaactttaatgtttgtatctttgaccactaaatacttttatacatgc |
623 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
775279 |
ataggtactgtaaaaatgacttgtattattgtatataatcaaactgacttttgtaactttaatgtttgtatctttgaccactagatacttttatacatgc |
775180 |
T |
|
| Q |
624 |
atccaaactttattagtctcattttagttaacttaaatatgatctgtctaatgtcttgatacatttcattgacaaactagtagaatattaatatcattac |
723 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
775179 |
atccaaac-ttattagtctcattttagttaacttaaatatggtc-------tgtcttgatacatttcattgacaaactagtagaatattaatatcatt-- |
775090 |
T |
|
| Q |
724 |
aacaatagcatattagcattaatggtaaaatagtagcaaagaaaacatattgattaattattgatgttatccctccctgagagtccataaaatcatatct |
823 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
775089 |
--------------------aatggtaaaatagtagcaaagaaaacatattgattaattattgatgttacccctccctgagagtccataaaatcatatct |
775010 |
T |
|
| Q |
824 |
gctactatttcaatagaatttctgatgagggttaaaacatcaaattagtttatgcacttcacttttctttcacattgttgacttcaatgttttacaggga |
923 |
Q |
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| T |
775009 |
gctactatttcaatagaatttctgatgagggttaaaacatcaaattagtttatgcacttcacttttctttcacattgttgacttcaatgttttacaggga |
774910 |
T |
|
| Q |
924 |
actctcaacaaaagctaagaaagcaaacaatgtatggtg |
962 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||| |
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| T |
774909 |
actctcaagaaaagctaagaaagcaaacaatgtatggtg |
774871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 4e-90; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 677 - 1009
Target Start/End: Original strand, 17461157 - 17461466
Alignment:
| Q |
677 |
tcttgatacatttcattgacaaactagtagaatattaatatcattacaacaatagcatattagcattaatggtaaaatagtagcaaagaaaacatattga |
776 |
Q |
| |
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|||| |||||| || ||||||||||||| ||||| |||||||||||| |||| ||||| ||||||||||||||||||||| ||| |||| ||| |
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| T |
17461157 |
tcttaatacatgtctttgacaaactagttgaatactaatatcattacgacaacagcat--------taatggtaaaatagtagcaaataaagcatactga |
17461248 |
T |
|
| Q |
777 |
ttaattattgatgttatccctccctgagagtccataaaatcatatctgctactatttcaatagaatttctgatgagggttaaaacatcaaattagtttat |
876 |
Q |
| |
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|||||||| |||||||||||| |||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17461249 |
ttaattatagatgttatccctttctgagagtccataa--tcatatatgctactatttcagtagaatttctgatgagggttaaaacatcaaatt------- |
17461339 |
T |
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| Q |
877 |
gcacttcacttttctttcacattgttgacttcaatgttttacagggaactctcaacaaaagctaagaaagcaaacaatgtatggtgacgcttaagtgggt |
976 |
Q |
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| T |
17461340 |
------cacttttctttcacattgttgatttcaaccttttacagggaactctcaaaaaaagctaagaaagcaaacaatgtatggtggcgcttaagtgggt |
17461433 |
T |
|
| Q |
977 |
tgcttggggatcaaaatcgcttgctgatgtaca |
1009 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
17461434 |
tgcttggggatcaaaatcgcttgctgatgtaca |
17461466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 869 - 1009
Target Start/End: Complemental strand, 17455698 - 17455558
Alignment:
| Q |
869 |
tagtttatgcacttcacttttctttcacattgttgacttcaatgttttacagggaactctcaacaaaagctaagaaagcaaacaatgtatggtgacgctt |
968 |
Q |
| |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||| |
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| T |
17455698 |
tagtttatgcacttcacttttctttcacattttcgacttcaatgttttacagggaactctcaagaaaagctaagaaagcaaacaatgtatggtggcactt |
17455599 |
T |
|
| Q |
969 |
aagtgggttgcttggggatcaaaatcgcttgctgatgtaca |
1009 |
Q |
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| T |
17455598 |
aagtgggttgcttggggatcaaaatcgcttgctgatgtaca |
17455558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 299 - 429
Target Start/End: Complemental strand, 17456051 - 17455921
Alignment:
| Q |
299 |
agataaatcctatatttggacatggatgtttctggtacccttagcagcttacattctgtggcagcttctatacctcctcattgttaatgtcttgtgccga |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17456051 |
agataaatcctatatttggacatggatgtttctggtacccttagcagcttacattctgtggcagcttctatacctcctcattgttaatgttttgtgccga |
17455952 |
T |
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| Q |
399 |
aaacggcttttaagagatcctgaagtcatga |
429 |
Q |
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||||||||||||||||||||||| |||||| |
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| T |
17455951 |
caacggcttttaagagatcctgaaatcatga |
17455921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 210 - 444
Target Start/End: Complemental strand, 17805490 - 17805256
Alignment:
| Q |
210 |
ttctttaccattagatggtggaatcctgctacctttgaagctatgcatccagagggatctcttgatggagatacatggccttttgttgaagataaatcct |
309 |
Q |
| |
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|||||||||||| ||||||||||||||| ||||| |||||||||| ||||||||| || || ||| ||||||||||| | ||||||||||||||| |
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| T |
17805490 |
ttctttaccattcgatggtggaatcctgagaccttagaagctatgcgaccagagggagctgctgcaagagttacatggccttatattgaagataaatcct |
17805391 |
T |
|
| Q |
310 |
atatttggacatggatgtttctggtacccttagcagcttacattctgtggcagcttctatacctcctcattgttaatgtcttgtgccgaaaacggctttt |
409 |
Q |
| |
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|| | || |||||| |||||||||| ||||||| || ||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| |||| |
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| T |
17805390 |
atctatgtacatggctgtttctggttcccttagtagtttacaccttgtggcaggttctatactacctcattgtcaatgtcttacgccgacaacggttttt |
17805291 |
T |
|
| Q |
410 |
aagagatcctgaagtcatgagttcctataggtaat |
444 |
Q |
| |
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||||||||| |||||||||| |||||||||||||| |
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| T |
17805290 |
aagagatcccgaagtcatgacttcctataggtaat |
17805256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 1e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 187 - 444
Target Start/End: Original strand, 52142472 - 52142729
Alignment:
| Q |
187 |
tattattcttttcaggaattgccttctttaccattagatggtggaatcctgctacctttgaagctatgcatccagagggatctcttgatggagatacatg |
286 |
Q |
| |
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|||| |||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||| |||||| |
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| T |
52142472 |
tattgttctttccaggaattgttatctttaccattagatggtggaatcctgctacttttgaagctatgcatccagagggatctcttcaaagagttacatg |
52142571 |
T |
|
| Q |
287 |
gccttttgttgaagataaatcctatatttggacatggatgtttctggtacccttagcagcttacattctgtggcagcttctatacctcctcattgttaat |
386 |
Q |
| |
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| T |
52142572 |
gccttatgttgaagataaatcctatctttggacatggctgtttctggttcccttagtagcttacattctgtggcaggttctatacttcctcattgtcaat |
52142671 |
T |
|
| Q |
387 |
gtcttgtgccgaaaacggcttttaagagatcctgaagtcatgagttcctataggtaat |
444 |
Q |
| |
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||||| ||||| || ||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
52142672 |
gtcttacgccgacaaaggcttttaagagatcctgaagtcatgacatcctacaggtaat |
52142729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 899 - 1009
Target Start/End: Original strand, 52142789 - 52142899
Alignment:
| Q |
899 |
tgttgacttcaatgttttacagggaactctcaacaaaagctaagaaagcaaacaatgtatggtgacgcttaagtgggttgcttggggatcaaaatcgctt |
998 |
Q |
| |
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||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||| ||||||| ||| |||||||| | ||||||||||||||||| | |
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| T |
52142789 |
tgttgacttcaatctttcacagggaactctcaaaaaaagctaagaaagcaaacaatatatggtggcgcctaagtgggctatttggggatcaaaatcgcat |
52142888 |
T |
|
| Q |
999 |
gctgatgtaca |
1009 |
Q |
| |
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||| ||||||| |
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| T |
52142889 |
gctaatgtaca |
52142899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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