View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12164_high_10 (Length: 386)
Name: NF12164_high_10
Description: NF12164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12164_high_10 |
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| [»] scaffold0187 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 4e-88; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 29 - 265
Target Start/End: Complemental strand, 37882173 - 37881940
Alignment:
| Q |
29 |
cactgcgagttcgcaaccacaatctgtgttttgataactatgatctctttactgaagttccttagcnnnnnnnnnnnngtaacttacgagtggaacattt |
128 |
Q |
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| T |
37882173 |
cactgcaagttcgcaaccacaatctgtgttttgataactatgatctctttactgaagttccttagcaaaaaaaa----gtaacttacgagtggaacactt |
37882078 |
T |
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| Q |
129 |
tatccgaatactttgcactgttctctaaattagaattaaattatagacatgaagaaagaataaactt-aaagattattcatatttacattaattggcata |
227 |
Q |
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| T |
37882077 |
tatccgaatactttgcactgttctctaaattagaattaaattatagacatgaagaaagaataaacttgaaagattattcatatttacattacttggcatg |
37881978 |
T |
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| Q |
228 |
gctcacaaatgataatcaataactaattacatcagaga |
265 |
Q |
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| T |
37881977 |
gttcacaaatgataatcaataactaattacaacagaga |
37881940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 196 - 264
Target Start/End: Complemental strand, 37911958 - 37911890
Alignment:
| Q |
196 |
aaagattattcatatttacattaattggcatagctcacaaatgataatcaataactaattacatcagag |
264 |
Q |
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| T |
37911958 |
aaagattattcatatttacattacttggcatggttcacaaatgataatcaataactaattacaacagag |
37911890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 303 - 357
Target Start/End: Complemental strand, 37881902 - 37881848
Alignment:
| Q |
303 |
tgttcgtatcctactgatcaggttgagcttgccagtgaatttgagattcagaaat |
357 |
Q |
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| T |
37881902 |
tgttcgtatcctactgatcaggttgagcttggcaatgaatttgagattcagaaat |
37881848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 37855668 - 37855620
Alignment:
| Q |
309 |
tatcctactgatcaggttgagcttgccagtgaatttgagattcagaaat |
357 |
Q |
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| T |
37855668 |
tatcctactgatcaggttgagcttggcaatgaatttgagattcagaaat |
37855620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 37867856 - 37867808
Alignment:
| Q |
309 |
tatcctactgatcaggttgagcttgccagtgaatttgagattcagaaat |
357 |
Q |
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| T |
37867856 |
tatcctactgatcaggttgagcttggcaatgaatttgagattcagaaat |
37867808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 37911841 - 37911793
Alignment:
| Q |
309 |
tatcctactgatcaggttgagcttgccagtgaatttgagattcagaaat |
357 |
Q |
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| T |
37911841 |
tatcctactgatcaggttgagcttggcaatgaatttgagattcagaaat |
37911793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 6441 - 6533
Alignment:
| Q |
173 |
agacatgaagaaagaataaactt-aaagattattcatatttacattaattggcatagctcacaaatgataatcaataactaattacatcagag |
264 |
Q |
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| T |
6441 |
agacgtgaagagagaataaacttgaaaggttattcatatttacattacttggcatggttcacaaatgataatcaataactaattacaacagag |
6533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 300 - 357
Target Start/End: Original strand, 6571 - 6628
Alignment:
| Q |
300 |
gattgttcgtatcctactgatcaggttgagcttgccagtgaatttgagattcagaaat |
357 |
Q |
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| T |
6571 |
gattgttcgtatcctactgatcaggttgagcttggcaatgaatttgagattcagaaat |
6628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 357
Target Start/End: Original strand, 16908 - 16956
Alignment:
| Q |
309 |
tatcctactgatcaggttgagcttgccagtgaatttgagattcagaaat |
357 |
Q |
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| T |
16908 |
tatcctactgatcaggttgagcttggcaatgaatttgagattcagaaat |
16956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 309 - 357
Target Start/End: Original strand, 27236 - 27284
Alignment:
| Q |
309 |
tatcctactgatcaggttgagcttgccagtgaatttgagattcagaaat |
357 |
Q |
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|||||||||||||||||||| |||| || |||||||||||||||||||| |
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| T |
27236 |
tatcctactgatcaggttgaccttggcaatgaatttgagattcagaaat |
27284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 6387 - 6424
Alignment:
| Q |
134 |
gaatactttgcactgttctctaaattagaattaaatta |
171 |
Q |
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| T |
6387 |
gaatactttgcactgttctctaaattaaaactaaatta |
6424 |
T |
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