View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12164_high_11 (Length: 373)
Name: NF12164_high_11
Description: NF12164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12164_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 219 - 344
Target Start/End: Original strand, 55319 - 55444
Alignment:
| Q |
219 |
attggctaattgaagcatcctctacagtttttcaactgtctagcaaaaaccaatctagaattgggaacctaaaatacgtatggaagaaccttcaggtgga |
318 |
Q |
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| T |
55319 |
attggctaattgaagcatcctctacagtttttcaactgtctagcaaaaaccaatctagaattgggaacctaaaatacctatggaagaaccttcaggtgga |
55418 |
T |
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| Q |
319 |
catccttcaacttaagcattctttgt |
344 |
Q |
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| T |
55419 |
catccttcaacttaagcattctttgt |
55444 |
T |
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Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 55268 - 55322
Alignment:
| Q |
1 |
attatatttaatagaaattgtggtagtagtaaacacaaatgttatagaactattg |
55 |
Q |
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| T |
55268 |
attatatttaatagaaattgtggtagtagcaaacacaaatgttatagaactattg |
55322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 146 - 344
Target Start/End: Original strand, 33754949 - 33755139
Alignment:
| Q |
146 |
taatggatttgcagcttatgcgtcctaaaaaggttacattctacaaaatagtttttgtaagaaagttaaaatcattggctaattgaagcatcctctacag |
245 |
Q |
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| T |
33754949 |
taatgtatttgcagcttatgcgccctaaaaaggctacaacttaccgactagtttttgtaagaaagttaaaatctttggctaattgaagcatcctctacag |
33755048 |
T |
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| Q |
246 |
tttttcaactgtctagcaaaaaccaatctagaattgggaacctaaaatacgtatggaagaaccttcaggtggacatccttcaacttaagcattctttgt |
344 |
Q |
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| T |
33755049 |
tttttcaaatgagcgacaaaaactaatatag--------acccaaaataccgatggaacaaccttcaggtggacacccttcaacttaagtactctttgt |
33755139 |
T |
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