View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12164_high_13 (Length: 354)
Name: NF12164_high_13
Description: NF12164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12164_high_13 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 27105679 - 27105355
Alignment:
| Q |
1 |
cagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggtataaggttcacaacttt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27105679 |
cagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggtataaggttcacaacttt |
27105580 |
T |
|
| Q |
101 |
tgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattgtaactggtattagacgc |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27105579 |
tgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattgtagctggtattagacgc |
27105480 |
T |
|
| Q |
201 |
aagttgaaggattttgaacctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcgagctcgatgaaaggccac |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27105479 |
aagttgaaggattttgaacctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcgagctcgatgaaaggccac |
27105380 |
T |
|
| Q |
301 |
tctatgaaattattaacctaataag |
325 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
27105379 |
tctatgaaattattaacctaataag |
27105355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 27098680 - 27098365
Alignment:
| Q |
1 |
cagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggtataaggttcacaacttt |
100 |
Q |
| |
|
||||||||||| |||||||||||||| | || ||||||||| |||||| |||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
27098680 |
cagttatgaagcaatattgttttaatattgatggtgaaatgataacaaggcttaagttgagcttgatgaaggaaagtggaaatataaggttcacaacttt |
27098581 |
T |
|
| Q |
101 |
tgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattgtaactggtattagacgc |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| | |||||||||||| |
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|
| T |
27098580 |
tgaatcaattgcaggttatgtttggagatcaagagcaagagccttaaaacttaacagcaatggtgaaacagtactgaccattgtagcaggtattagacgc |
27098481 |
T |
|
| Q |
201 |
aagttgaaggattttgaacctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcgagctcgatgaaaggccac |
300 |
Q |
| |
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|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27098480 |
aacttgaaggattttgatcctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagtgagctcgatgaaaggccac |
27098381 |
T |
|
| Q |
301 |
tctatgaaattattaa |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
27098380 |
tctatgaaattattaa |
27098365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 27086002 - 27085768
Alignment:
| Q |
13 |
aatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggtataaggttcacaacttttgaatcaattgc |
112 |
Q |
| |
|
||||||||||||| || |||||||||||| ||| || |||||||||||||||||||| |||| || | |||||||||||||||||||||| |||| |
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|
| T |
27086002 |
aatattgttttaaagtagagggtgaaatgataagaagacttaagttgagtttgatgaatgaaaatgaaaatataaggttcacaacttttgaagtgcttgc |
27085903 |
T |
|
| Q |
113 |
aggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattgtaactggtattagacgcaagttgaaggat |
212 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| | ||||||| ||||| | | ||||||| | ||||| ||||||||| || |||||| |
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|
| T |
27085902 |
aggttatgtgtggaggtcaagagcaagagccttaaaacttaaaagcaatggtttaacagcgctaaccattgcagttggtagtagacgcaacttaaaggat |
27085803 |
T |
|
| Q |
213 |
tttgaacctttacctaatggttattatgggaattc |
247 |
Q |
| |
|
| ||| |||||||||| || |||||||||||||| |
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|
| T |
27085802 |
tatgatactttacctaaagggtattatgggaattc |
27085768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 84 - 316
Target Start/End: Complemental strand, 27056765 - 27056534
Alignment:
| Q |
84 |
ataaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattg |
183 |
Q |
| |
|
|||||||||||||||||||| | | ||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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|
| T |
27056765 |
ataaggttcacaacttttgagt-acttgcaggttatgtgtagaggtcaagagcaagagccttaaaacttaacagcaatggtgaaacagtgctgaccattg |
27056667 |
T |
|
| Q |
184 |
taactggtattagacgcaagttgaaggattttgaacctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcga |
283 |
Q |
| |
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| ||||||||||||||| ||| |||||| ||| |||||||||| || || ||||| ||||| | | |||| ||| ||| |||||||| || || |
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|
| T |
27056666 |
cagttggtattagacgcaacttggaggattatgatactttacctaaagggtaatatggaaattctactatagatgtaaatgttgttttaaaagtgagtga |
27056567 |
T |
|
| Q |
284 |
gctcgatgaaaggccactctatgaaattattaa |
316 |
Q |
| |
|
|||| | |||| |||||||||||||||| |||| |
|
|
| T |
27056566 |
gctcaacgaaatgccactctatgaaattgttaa |
27056534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 13 - 183
Target Start/End: Complemental strand, 27041524 - 27041354
Alignment:
| Q |
13 |
aatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggtataaggttcacaacttttgaatcaattgc |
112 |
Q |
| |
|
||||||||||||| || |||||||||||| ||||| ||||| |||||||||||||| ||| || | || |||||||||||||||||| |||| |
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| T |
27041524 |
aatattgttttaaagtagagggtgaaatgataacaggacttaaattgagtttgatgaataaaaatgaaaaaatgaggttcacaacttttgaagtgcttgc |
27041425 |
T |
|
| Q |
113 |
aggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattg |
183 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
27041424 |
aggttatgtgtggaggtcaagagcaagagccttaaaacttaacagcaatggtgaaacagtgttgaccattg |
27041354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 4 - 316
Target Start/End: Complemental strand, 27069955 - 27069643
Alignment:
| Q |
4 |
ttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggtataaggttcacaacttttga |
103 |
Q |
| |
|
|||| ||| |||||| |||||| || ||||| |||| | |||||| |||||||||||||||||||| |||||| | ||| |||| ||||||||||| |
|
|
| T |
27069955 |
ttattaagcaatattcttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaataaaagtgaaaaaatagggtttacaacttttga |
27069856 |
T |
|
| Q |
104 |
atcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattgtaactggtattagacgcaag |
203 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||||||||||| |||| || ||||| | ||||| || ||| || || |||||| ||||| || |
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|
| T |
27069855 |
agttcttgcaggttatgtgtggaggtcaagagcaagagccttaaagcttagcagcaatgataaaacaatgctgaatatgttagttggtatgagacgtaac |
27069756 |
T |
|
| Q |
204 |
ttgaaggattttgaacctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcgagctcgatgaaaggccactct |
303 |
Q |
| |
|
|||| ||||||||| ||||||| || || ||||| |||||||| | |||||||| ||| |||||||| || ||||||||||||| |||||||| |
|
|
| T |
27069755 |
ttgatggattttgatactttaccgaaagggtattacgggaattctaccatggatgcaaaagttgttttaaaagtgagtgagctcgatgaaatgccactct |
27069656 |
T |
|
| Q |
304 |
atgaaattattaa |
316 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
27069655 |
atgaaattgttaa |
27069643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 4 - 162
Target Start/End: Complemental strand, 27062882 - 27062730
Alignment:
| Q |
4 |
ttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggtataaggttcacaacttttga |
103 |
Q |
| |
|
|||| ||| ||||||||||||| || ||||| |||| | |||||| |||||||||||||||||||| |||| | |||||||||||||||||||| |
|
|
| T |
27062882 |
ttattaagcaatattgttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaacgaaaat------ataaggttcacaacttttga |
27062789 |
T |
|
| Q |
104 |
atcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatg |
162 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||||||||||||||| || ||||| |
|
|
| T |
27062788 |
agtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttagcagcaatg |
27062730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 316
Target Start/End: Complemental strand, 27045834 - 27045634
Alignment:
| Q |
116 |
ttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattgtaactggtattagacgcaagttgaaggatttt |
215 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||| ||||||||| ||||| |||||| || || |||||||||||||| |||| | || | |
|
|
| T |
27045834 |
ttatgtgtggaggtcaagagcaagagccttacaacttagcaacaatggaaaaacaatgttgaatatgttagttggtattagacgcagcatgaaaggttat |
27045735 |
T |
|
| Q |
216 |
gaacctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcgagctcgatgaaaggccactctatgaaattatta |
315 |
Q |
| |
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|| ||||| |||| || |||||||| ||| | ||| |||| ||| ||||||||||||||| |||||| |||||| |||||||||||||||| ||| |
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|
| T |
27045734 |
gatcctttgcctatagggtattatggtaatactactgtggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgtta |
27045635 |
T |
|
| Q |
316 |
a |
316 |
Q |
| |
|
| |
|
|
| T |
27045634 |
a |
27045634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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