View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12164_high_14 (Length: 351)
Name: NF12164_high_14
Description: NF12164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12164_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 30 - 335
Target Start/End: Complemental strand, 44925855 - 44925548
Alignment:
| Q |
30 |
aaaactgaccctgaaagtttatttaatagctcatggaacaaattgtacatcctaggatattgtcgaaggtcattctcaacattcttgatgtataagataa |
129 |
Q |
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| T |
44925855 |
aaaactgaccctgaaagtttatttaatagctcatggaacaaattgtacatcctaggatattgtcgaaagtcattctcaacattcttgatgtataagataa |
44925756 |
T |
|
| Q |
130 |
cagaatcagtttccaatatagaaagcaagacctg-nnnnnnnttacaattgtgttgcttgctaaaattgaaattgaacaatgtcaccgaaatttcgtcaa |
228 |
Q |
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| T |
44925755 |
cagaatcagtttccaatatagaaagcaagacctgaaaaaaaattacaattgtgttgcttgttaaaatttaaattgaacaatgtcaccgcaatttcgtcaa |
44925656 |
T |
|
| Q |
229 |
ctataatgttttctttgatt-nnnnnnnntttaagctttgaaaagctttcggtgatataatcatcttgtagagtgaatctaggagacgcttttcatcaaa |
327 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44925655 |
ctataatgttttctttgattcaaaaaaaatttaagctttgaaaagccttcagtgatataatcaccttgtagagtgaatctaggagacgcttttcatcaaa |
44925556 |
T |
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| Q |
328 |
acagacac |
335 |
Q |
| |
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|||||||| |
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| T |
44925555 |
acagacac |
44925548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 163
Target Start/End: Complemental strand, 44934009 - 44933879
Alignment:
| Q |
33 |
actgaccctgaaagtttatttaatagctcatggaacaaattgtacatcctaggatattgtcgaaggtcattctcaacattcttgatgtataagataacag |
132 |
Q |
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| T |
44934009 |
actgatcctgaaagtttatttaatgtcttttggaacaatctgtacatccttggtgatccaagaaagaccttctcaacattcttgatgtataaaataacag |
44933910 |
T |
|
| Q |
133 |
aatcagtttccaatatagaaagcaagacctg |
163 |
Q |
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| T |
44933909 |
aaccagcttctgatatagaaaccaagacctg |
44933879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 328
Target Start/End: Complemental strand, 44933759 - 44933713
Alignment:
| Q |
282 |
atataatcatcttgtagagtgaatctaggagacgcttttcatcaaaa |
328 |
Q |
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||||||||| |||||||||||||| ||||| | |||||||||||||| |
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| T |
44933759 |
atataatcaccttgtagagtgaatgtaggaaaagcttttcatcaaaa |
44933713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 328
Target Start/End: Complemental strand, 32196598 - 32196527
Alignment:
| Q |
257 |
tttaagctttgaaaagctttcggtgatataatcatcttgtagagtgaatctaggagacgcttttcatcaaaa |
328 |
Q |
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|||||||| ||||||||||| |||||||||||| ||| |||||||| |||| || ||||||||| ||||| |
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| T |
32196598 |
tttaagctatgaaaagcttttagtgatataatcaccttatagagtgagtctatgaagcgcttttcaacaaaa |
32196527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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