View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12164_high_17 (Length: 340)
Name: NF12164_high_17
Description: NF12164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12164_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 30 - 315
Target Start/End: Complemental strand, 42000306 - 42000024
Alignment:
| Q |
30 |
agttctgggtatataattatttattttttgtttaaaaattttactatcgaaaatcacaaaatattaagaatgaaaaagtgtagaattatggattcaaact |
129 |
Q |
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| T |
42000306 |
agttctgggtatataattatttattttttgtttaaaaattctactatcgaaaatcacaaaatattaagaatgaaaaagtgtagaattatggattcaaact |
42000207 |
T |
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| Q |
130 |
catatcttaatatatcaaatgttcaattcgttgaagtttttaacatttggttgtgcttgcttatgatactcgatagnnnnnnncttgcatataaaacatg |
229 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42000206 |
cataccttaatataacaaatgttcaattcgttgaagtttttaacatttggttgtgcttgcttatgatactcgatag---ttttcttgcatataaaacatg |
42000110 |
T |
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| Q |
230 |
aatagttttaaaataaatttaaaatattaaaacatcaattagaaatcgaatgaagtgagtaattaatgacaaatacctaacatgat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42000109 |
aatagttttaaaataaatttaaaatattaaaacatcaattagaaatcgaatgaagtgagtaattaatgacaaatacctaacatgat |
42000024 |
T |
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