View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12164_high_2 (Length: 649)
Name: NF12164_high_2
Description: NF12164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12164_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 36 - 434
Target Start/End: Original strand, 32706698 - 32707096
Alignment:
| Q |
36 |
attagctccttcctctttattatatttggatttctttgtttgtagagattgaaaattgttactgcgctgttttcactattactttttcctatatcagaat |
135 |
Q |
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| T |
32706698 |
attagctccttcctctttattatatttggatttctttgtttgtagagattgaaaattgttactgcgctgttttcactattactttttcctatatcagaat |
32706797 |
T |
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| Q |
136 |
gcgtcgatttcaggtaacgacgattacaaattctactttccaagacacaggtatagcagctataggcgtggagcatcaatttcacttccaaatatcccag |
235 |
Q |
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| T |
32706798 |
gcgtcgatttcagctaacgacgattacaaattctactttccaagacacaggcatagcagctataggcgtggtgcatcaatttcacttccaaatatcccag |
32706897 |
T |
|
| Q |
236 |
atatccctttaagcatggtgttgcctcattttggaaaatgaagtgctgtttttaagattctcaatacgtaagctactgcagttttttgtgcaatgtctaa |
335 |
Q |
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| T |
32706898 |
atatccctttaagcatggtgttgcctcattttggaaaatgaagtgctgtttttaagattctcaatacgtaagctactgcagttttttgtgcaatgtctaa |
32706997 |
T |
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| Q |
336 |
attgtgccgctacggaaatattttactagcatgcgttggttatgaatatgaatataatgtgctttgacatctgctgctgtacaatataatgattgatat |
434 |
Q |
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| T |
32706998 |
attgtgccgctacggaaatattttactagcatgcgttggttatgaatatgaatataatgtgcttttacatctgctgctgcacaatataatgattgatat |
32707096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 32749254 - 32749306
Alignment:
| Q |
60 |
tttggatttctttgtttgtagagattgaaaattgttactgcgctgttttcact |
112 |
Q |
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| T |
32749254 |
tttggatttctatgtttgtagagattgaaaattggtactatgctgctttcact |
32749306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 155 - 550
Target Start/End: Original strand, 3001615 - 3002011
Alignment:
| Q |
155 |
acgattacaaattctactttccaagacacaggtatagcagctataggcgtggagcatcaatttcacttccaaatatcccagatatccctttaagcatggt |
254 |
Q |
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| T |
3001615 |
acgattacaaattctactctccaagacacaggtatagcaggtataggcgtggtgcatcaatttcacttccaaatatcccacatatccctttaagcatggt |
3001714 |
T |
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| Q |
255 |
gttgcctcattttggaaaatgaagtgctgtttttaagattctcaatacgtaagctactgcagttttttgtgcaatgtctaaattg-tgccgctacggaaa |
353 |
Q |
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| T |
3001715 |
gttgcctcattttggaaaatgaagtgctgctttcaagatgctcaatacgtaagctactgcagttttttgtgcaatgtctaaattgttgccactacggaaa |
3001814 |
T |
|
| Q |
354 |
tattttactagcatgcgttggttatgaatatgaatataatgtgctttgacatctgctgctgtacaatataatgattgatatctaatgatatattgtacta |
453 |
Q |
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| T |
3001815 |
tattttactagcatgtgttggttatgaatatgaatataatgtgctttggcatctgctgctgcacaatataatgattg-tatgtaatgatatattatacta |
3001913 |
T |
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| Q |
454 |
aatgagatagtaatactatttaaaggttgcataaacggtaattgctgcagtttcttgtccaaactttatgac-attgacttgtttttacagagttatc |
550 |
Q |
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| T |
3001914 |
aatgggatagtaatactatttaaaggttgcataaatggtaattgctgcagtttcttgtccaaactttatgacttttgacttgtttttacatagttatc |
3002011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 3001217 - 3001291
Alignment:
| Q |
62 |
tggatttctttgtttgtagagattgaaaattgttactgcgctgttttcactattactttttcctatatcagaatg |
136 |
Q |
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| T |
3001217 |
tggatttctttgtttgtagatattgaaaattggtactgtgctgttttcactgttactttttcctataccagaatg |
3001291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 566 - 635
Target Start/End: Original strand, 16895055 - 16895126
Alignment:
| Q |
566 |
taaacccagttgaatcatgcagtatacacatt--gggtctaaaatgttttctcttccccaaaaggaaaagta |
635 |
Q |
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| T |
16895055 |
taaacccaattgaatcatgcagtatacatattatgggtctaaaatgttttctcttccccaaagggaaaagta |
16895126 |
T |
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