View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12164_high_4 (Length: 613)

Name: NF12164_high_4
Description: NF12164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12164_high_4
NF12164_high_4
[»] chr4 (50 HSPs)
chr4 (1-611)||(2621028-2621638)
chr4 (349-506)||(2367648-2367805)
chr4 (99-476)||(2467213-2467587)
chr4 (99-239)||(2518904-2519044)
chr4 (341-476)||(2486229-2486364)
chr4 (105-240)||(2547221-2547356)
chr4 (99-222)||(2533984-2534107)
chr4 (364-459)||(5106333-5106428)
chr4 (341-459)||(5102106-5102224)
chr4 (353-474)||(2547466-2547587)
chr4 (170-239)||(5102326-5102395)
chr4 (105-229)||(5106558-5106685)
chr4 (365-486)||(12124770-12124891)
chr4 (362-462)||(2472035-2472135)
chr4 (106-157)||(2367982-2368033)
chr4 (105-204)||(2490805-2490904)
chr4 (353-476)||(2491062-2491185)
chr4 (341-459)||(2519155-2519273)
chr4 (99-157)||(2525426-2525484)
chr4 (107-157)||(5035301-5035351)
chr4 (107-213)||(12124524-12124630)
chr4 (1-42)||(2373666-2373707)
chr4 (341-402)||(2382562-2382623)
chr4 (101-202)||(2475953-2476054)
chr4 (177-241)||(2361198-2361262)
chr4 (109-157)||(2546825-2546873)
chr4 (341-476)||(2525679-2525814)
chr4 (107-157)||(2373548-2373598)
chr4 (1-42)||(2368103-2368144)
chr4 (365-506)||(2373212-2373352)
chr4 (103-230)||(2393839-2393965)
chr4 (266-455)||(2477421-2477604)
chr4 (15-59)||(2167816-2167860)
chr4 (101-149)||(2363162-2363210)
chr4 (177-237)||(2381630-2381690)
chr4 (11-71)||(2382915-2382975)
chr4 (347-447)||(2391036-2391136)
chr4 (177-237)||(2391258-2391318)
chr4 (101-133)||(2625602-2625634)
chr4 (1-41)||(12124412-12124452)
chr4 (2-42)||(12126466-12126506)
chr4 (269-328)||(2486145-2486204)
chr4 (341-476)||(5035544-5035679)
chr4 (431-473)||(1517029-1517071)
chr4 (177-230)||(2382747-2382800)
chr4 (177-230)||(2482529-2482582)
chr4 (187-224)||(2486066-2486103)
chr4 (105-157)||(2460283-2460335)
chr4 (105-157)||(2471733-2471785)
chr4 (391-479)||(12126852-12126940)
[»] chr7 (1 HSPs)
chr7 (362-459)||(2576415-2576512)
[»] chr1 (2 HSPs)
chr1 (362-462)||(15837979-15838079)
chr1 (101-137)||(7555124-7555160)
[»] chr8 (1 HSPs)
chr8 (98-151)||(18314718-18314771)
[»] chr5 (2 HSPs)
chr5 (431-487)||(12846948-12847004)
chr5 (106-150)||(28673354-28673398)
[»] chr6 (2 HSPs)
chr6 (176-239)||(6423906-6423969)
chr6 (177-239)||(10579090-10579152)


Alignment Details
Target: chr4 (Bit Score: 567; Significance: 0; HSPs: 50)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 1 - 611
Target Start/End: Complemental strand, 2621638 - 2621028
Alignment:
Q  1 attacctgataaattaattttgcggagtttgggaagtgccaacaaccgatcatcatcatctagctcaaaatcatagctagtagcaataacaggatggcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621638 attacctgataaattaattttgcggagtttgggaagtgccaacaaccgatcatcatcatctagctcaaaatcatagctagtagcaataacaggatggcta 2621539  T
Q  101 aggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  2621538 aggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattaattcggtaacaagtgagagatgtcaaatttt 2621439  T
Q  201 tcatgtttttggagaaagctcgcaacccatctgtaggaatattgctatagcaatggaagaaagtaagcgatttgatgtctacagggaaagtggatatatt 300  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621438 tcatatttttggagaaagctcgcaacccatctgtaggaatattgctatagcaatggaagaaagtaagcgatttgatgtctacagggaaagtggatatatt 2621339  T
Q  301 agtaagaagctcgtcgaggtcactttctgtagagaagcccgtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621338 agtaagaagctcgtcgaggtcactttctgtagagaagcccgtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatg 2621239  T
Q  401 gttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggacacgagggagagaggttccaagtaatggttgttgtcgc 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  2621238 gttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggatacgagggagagaggttcccagtaatggttgttgtcgc 2621139  T
Q  501 cgtcgtcaactaacttgaagatacactcccaccactcctctggtaagaatgaacatgtttccgccattgtttttggaatattgaatgtcaatgattatga 600  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| | |||||    
T  2621138 catcgtcaactaacttgaagatacactcccaccactcctctggtaagaatgaacatgtttccgccattgtttgtggaatattggatgtcaataactatga 2621039  T
Q  601 taatgatgatg 611  Q
     ||||||||||    
T  2621038 caatgatgatg 2621028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 349 - 506
Target Start/End: Complemental strand, 2367805 - 2367648
Alignment:
Q  349 gagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggac 448  Q
    |||||||||||  || |||||||| | ||| ||||||  || ||||||||| ||||||||||| ||||  |||||||| || |||||||||||||||||     
T  2367805 gagggatgtgaggttggggaacctttggaaaaggcgataaaggaaagggattgttttatcggacattgctatggagaatcggagacggttggtgatggag 2367706  T
Q  449 aaaaactgtttggacacgagggagagaggttccaagtaatggttgttgtcgccgtcgt 506  Q
    | ||| |||||||| |||| ||| ||||||||||||||  |||||||||||| |||||    
T  2367705 agaaattgtttggagacgatggaaagaggttccaagtagcggttgttgtcgctgtcgt 2367648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 99 - 476
Target Start/End: Original strand, 2467213 - 2467587
Alignment:
Q  99 taaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattg---attcggtaacaagtgaaagatgtcaa 195  Q
    ||||| |||| |||||||||||||||||||||||||||| |||||| ||||| ||||||  ||| | |      ||||||||||||||||  ||||||||    
T  2467213 taaggatgagctcttcgagtaaagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattcggtaacaagtgagtgatgtcaa 2467312  T
Q  196 atttttcatgtttttggagaaagctcgcaacccatctgtaggaatattgctatagcaatggaagaaagtaagcgatttgatgtctacagggaaagtggat 295  Q
    ||||||||| | |||||||||||||||||||||||||| |||||   |  ||| |   ||| ||| ||| || ||||||| ||| | ||||||||||||     
T  2467313 atttttcatctctttggagaaagctcgcaacccatctgcaggaaccgt--tatgggg-tggtagagagtgagggatttgaggtccaaagggaaagtggag 2467409  T
Q  296 atattagtaagaagctcgtcgaggtcactttctgtagagaagcccgtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaag 395  Q
    || || ||||||||  ||| |||||||||||||   ||||     |||||||  |  ||| ||||||| |||||||| || ||||| ||| |||  ||||    
T  2467410 attttggtaagaagtgcgttgaggtcactttctaccgagaga---gtgatgtcaattgatctgatattggggaacctttcaaagagacgatgaagtaaag 2467506  T
Q  396 ggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggacacgagggagagag 476  Q
    |||| |||   ||||| || | || |||||| || |||| |||||| ||||||||||||||||| || |||| ||||||||    
T  2467507 ggattgttccgtcggaaatcgagacggagaatcgaagactgttggtaatggacaaaaactgttttgagacgacggagagag 2467587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 99 - 239
Target Start/End: Original strand, 2518904 - 2519044
Alignment:
Q  99 taaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatt 198  Q
    ||||| ||||||||| ||||||||||||||||||||||| |||||| |||||||||||| |||| |  || |||   |||||||||| | ||||||||||    
T  2518904 taaggatgagttctttgagtaaagggaaacaatcagcaatgaagaagagatcattcttgtggatatatttcatttaataacaagtgagatatgtcaaatt 2519003  T
Q  199 tttcatgtttttggagaaagctcgcaacccatctgtaggaa 239  Q
    |||||||||||  || |||||| ||||||| ||| ||||||    
T  2519004 tttcatgttttgagacaaagcttgcaacccttctttaggaa 2519044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 341 - 476
Target Start/End: Original strand, 2486229 - 2486364
Alignment:
Q  341 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 440  Q
    ||||| ||| ||||||| | |||||||||||  |  ||||| ||| ||| ||||||||| ||||| |||||||||||||  ||||| || ||||||||||    
T  2486229 gtgatattgtgggatgtaacattagggaacccataaaagagacgatgaaggaaagggattgttttctcggagattgtgaccgagaatcggagacggttgg 2486328  T
Q  441 tgatggacaaaaactgtttggacacgagggagagag 476  Q
    ||||||||| ||||||||| || |||||||||||||    
T  2486329 tgatggacagaaactgttttgagacgagggagagag 2486364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 105 - 240
Target Start/End: Original strand, 2547221 - 2547356
Alignment:
Q  105 tgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatttttcat 204  Q
    |||||||||| |||||||||||||||||||||| |||||||| ||||||||||| |||     |||||  | ||||| ||| ||| ||||||||||||||    
T  2547221 tgagttcttcaagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgattttggaacaaatgagagacgtcaaatttttcat 2547320  T
Q  205 gtttttggagaaagctcgcaacccatctgtaggaat 240  Q
     ||||  || |||||||||||||||| || ||||||    
T  2547321 cttttcagacaaagctcgcaacccatttgcaggaat 2547356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 99 - 222
Target Start/End: Original strand, 2533984 - 2534107
Alignment:
Q  99 taaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatt 198  Q
    ||||| |||||||||| ||||||||||||||||||||||  ||||| ||||||||||||  ||| |   | ||| | |||||||||| |||||| |||||    
T  2533984 taaggatgagttcttcaagtaaagggaaacaatcagcaatcaagaagagatcattcttgttgatatagctcatttgataacaagtgagagatgttaaatt 2534083  T
Q  199 tttcatgtttttggagaaagctcg 222  Q
    |||||| || ||||| ||||||||    
T  2534084 tttcatcttcttggacaaagctcg 2534107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 364 - 459
Target Start/End: Complemental strand, 5106428 - 5106333
Alignment:
Q  364 agggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgttt 459  Q
    ||||||||| | |||||||||| |||||||||||||||||| ||  | ||||||||  ||||| ||  ||||||||||||||||||||||||||||    
T  5106428 agggaaccttttgaagaggcgatgaatgaaagggatggtttgattagtgattgtgaccgagaatcgaggacggttggtgatggacaaaaactgttt 5106333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 341 - 459
Target Start/End: Complemental strand, 5102224 - 5102106
Alignment:
Q  341 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 440  Q
    ||||||||||| |||||||  ||||||||||| ||||| ||| ||||||||||||||||||||  ||| | ||||||||  ||||| || ||||  || |    
T  5102224 gtgatgttgagtgatgtgacgttagggaacctttcgaaaaggagaggaatgaaagggatggttcgatcagtgattgtgaccgagaatcgaagactattag 5102125  T
Q  441 tgatggacaaaaactgttt 459  Q
    |||| ||||||||||||||    
T  5102124 tgatagacaaaaactgttt 5102106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 353 - 474
Target Start/End: Original strand, 2547466 - 2547587
Alignment:
Q  353 gatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaa 452  Q
    |||||||| ||||||||||| | ||||| | |||||| | || ||||| | | |  |||||||||||  |||||||| ||||||||||||||||||| ||    
T  2547466 gatgtgatgttagggaacctttggaagaagtgaggaagggaaaggatgatatgactggagattgtgactgagaaccggagacggttggtgatggacagaa 2547565  T
Q  453 actgtttggacacgagggagag 474  Q
    |||||||||| |||| ||||||    
T  2547566 actgtttggagacgatggagag 2547587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 5102395 - 5102326
Alignment:
Q  170 attcggtaacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtaggaa 239  Q
    |||||||||||||||| |||||||||||||||||| |||| |||||| ||||||||||| | ||||||||    
T  5102395 attcggtaacaagtgatagatgtcaaatttttcatcttttgggagaatgctcgcaacccttttgtaggaa 5102326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 105 - 229
Target Start/End: Complemental strand, 5106685 - 5106558
Alignment:
Q  105 tgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggatttt---attgattcggtaacaagtgaaagatgtcaaattttt 201  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||| |||||   |       |   |||||||||||||||| |||||||||||||||    
T  5106685 tgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgtctacacccgaagcaattcggtaacaagtgatagatgtcaaattttt 5106586  T
Q  202 catgtttttggagaaagctcgcaaccca 229  Q
    ||| |||  |||||||||||||||||||    
T  5106585 catctttagggagaaagctcgcaaccca 5106558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 365 - 486
Target Start/End: Original strand, 12124770 - 12124891
Alignment:
Q  365 gggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggaca 464  Q
    |||||||| | |||||||||   || ||||||||| |||| ||| ||||||| |||||| ||  | ||||||||||||||||| | ||| |||||||| |    
T  12124770 gggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggaaaattggagacggttggtgatggagagaaattgtttggaga 12124869  T
Q  465 cgagggagagaggttccaagta 486  Q
    | | ||||||||||||||||||    
T  12124870 caatggagagaggttccaagta 12124891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 362 - 462
Target Start/End: Original strand, 2472035 - 2472135
Alignment:
Q  362 ttagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttgg 461  Q
    ||||||||||| ||||||||| || ||| ||||||||| |||| |  | ||||||||| |||||| |  ||||| ||||||||||| |||||||||||||    
T  2472035 ttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcagagacgattggtgatggagaaaaactgtttgg 2472134  T
Q  462 a 462  Q
    |    
T  2472135 a 2472135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 2368033 - 2367982
Alignment:
Q  106 gagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 157  Q
    |||||||||||||||||||||||||||||||| |||||| |||||| |||||    
T  2368033 gagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttg 2367982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 204
Target Start/End: Original strand, 2490805 - 2490904
Alignment:
Q  105 tgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatttttcat 204  Q
    ||||||| |||||||||||||||||||||||||  || || ||||||||||||  |||     | ||||| |||||||||| ||||||||||||||||||    
T  2490805 tgagttcgtcgagtaaagggaaacaatcagcaataaaaaagagatcattcttgttgataaacctcattcgataacaagtgagagatgtcaaatttttcat 2490904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 476
Target Start/End: Original strand, 2491062 - 2491185
Alignment:
Q  353 gatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaa 452  Q
    ||||| || ||||||||||| || ||||| |||  || ||||||||| |||  ||||||||||||||  || || || |||||||| |||||||||| ||    
T  2491062 gatgtaatgttagggaacctttcaaagagacgattaaggaaagggattgttgcatcggagattgtgaccgaaaatcggagacggtttgtgatggacagaa 2491161  T
Q  453 actgtttggacacgagggagagag 476  Q
    ||||||| || ||||| |||||||    
T  2491162 actgttttgagacgagtgagagag 2491185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 341 - 459
Target Start/End: Original strand, 2519155 - 2519273
Alignment:
Q  341 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 440  Q
    ||||||||||| ||||| |  || |||||||| || ||||| ||| ||| ||||||||| |||| ||| ||||||||||  ||| | || | ||||||||    
T  2519155 gtgatgttgagtgatgtaacgttggggaacctatcaaagagacgatgaaggaaagggattgtttgatctgagattgtgactgaggatcgaaaacggttgg 2519254  T
Q  441 tgatggacaaaaactgttt 459  Q
    ||||||||| |||||||||    
T  2519255 tgatggacagaaactgttt 2519273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 2525426 - 2525484
Alignment:
Q  99 taaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 157  Q
    ||||| ||||||||||||||| ||||||||||||||||| |||||  ||||||||||||    
T  2525426 taaggatgagttcttcgagtagagggaaacaatcagcaatgaagagcagatcattcttg 2525484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 107 - 157
Target Start/End: Original strand, 5035301 - 5035351
Alignment:
Q  107 agttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 157  Q
    |||||||||||||||||||||||||||||||  ||||| ||||||||||||    
T  5035301 agttcttcgagtaaagggaaacaatcagcaatcaagaaaagatcattcttg 5035351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 107 - 213
Target Start/End: Original strand, 12124524 - 12124630
Alignment:
Q  107 agttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatttttcatgt 206  Q
    |||||||| |||||||||||||||||||||| |||||| |||||| ||||  | ||   | | |||| | ||||||||| ||| |||||||||||||| |    
T  12124524 agttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctttagcatacaaatcattctggaacaagtgagagaggtcaaatttttcatct 12124623  T
Q  207 ttttgga 213  Q
    |||||||    
T  12124624 ttttgga 12124630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2373707 - 2373666
Alignment:
Q  1 attacctgataaattaattttgcggagtttgggaagtgccaa 42  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  2373707 attacctgataaattaatcttgcggagtttgggaagtgccaa 2373666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 341 - 402
Target Start/End: Complemental strand, 2382623 - 2382562
Alignment:
Q  341 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggt 402  Q
    ||||| ||||||||||||| |||||||| |||   |||||||||||||||||||||||||||    
T  2382623 gtgatattgagggatgtgacattagggagccttcggaagaggcgaggaatgaaagggatggt 2382562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 101 - 202
Target Start/End: Original strand, 2475953 - 2476054
Alignment:
Q  101 aggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatttt 200  Q
    ||||||| ||||||||||||||| || |||| ||| || ||||| ||||||| |||| |||| | |||  ||  ||||||||||| ||||||||||||||    
T  2475953 aggttgatttcttcgagtaaaggaaagcaattagctagaaagaagagatcatccttgtggatataattctttttgtaacaagtgagagatgtcaaatttt 2476052  T
Q  201 tc 202  Q
    ||    
T  2476053 tc 2476054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 2361262 - 2361198
Alignment:
Q  177 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtaggaata 241  Q
    ||||||||| |||||||||||||||||| |||||||| |||||||| | ||||  ||||||||||    
T  2361262 aacaagtgagagatgtcaaatttttcatttttttggacaaagctcgtagcccacttgtaggaata 2361198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 2546825 - 2546873
Alignment:
Q  109 ttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 157  Q
    ||||||||||||||| ||||||||||||| |||||||| ||||||||||    
T  2546825 ttcttcgagtaaaggaaaacaatcagcaatgaagaataaatcattcttg 2546873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 341 - 476
Target Start/End: Original strand, 2525679 - 2525814
Alignment:
Q  341 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 440  Q
    ||||| ||||| ||||  || ||||||||||| || ||||| |||  ||  |||||||| |||  || |||||||||||   |||| || |||| |||||    
T  2525679 gtgatattgagtgatgcaatgttagggaacctttcaaagagacgattaagaaaagggatagttgcattggagattgtgaccaagaatcgaagactgttgg 2525778  T
Q  441 tgatggacaaaaactgtttggacacgagggagagag 476  Q
    ||||||||| ||||||||| || |||||||||||||    
T  2525779 tgatggacagaaactgttttgagacgagggagagag 2525814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 157
Target Start/End: Complemental strand, 2373598 - 2373548
Alignment:
Q  107 agttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 157  Q
    ||||||||||| ||||||||||||||||||| |||||| |||||| |||||    
T  2373598 agttcttcgagcaaagggaaacaatcagcaatgaagaagagatcactcttg 2373548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2368144 - 2368103
Alignment:
Q  1 attacctgataaattaattttgcggagtttgggaagtgccaa 42  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  2368144 attaccagataaattaatcttgcggagtttgggaagtgccaa 2368103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 365 - 506
Target Start/End: Complemental strand, 2373352 - 2373212
Alignment:
Q  365 gggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggaca 464  Q
    |||||||| | ||||||||||  || |||||| || ||||||||| | ||||  |||||||| || ||| | ||||||||||| | ||| |||||||| |    
T  2373352 gggaacctttggaagaggcgattaaggaaaggaattgttttatcg-acattgctatggagaatcggagatgattggtgatggagagaaattgtttggaaa 2373254  T
Q  465 cgagggagagaggttccaagtaatggttgttgtcgccgtcgt 506  Q
    | | |||||||||||| |||||  || |||||| ||||||||    
T  2373253 caacggagagaggttcgaagtagcggctgttgttgccgtcgt 2373212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 103 - 230
Target Start/End: Complemental strand, 2393965 - 2393839
Alignment:
Q  103 gttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaa-ttttt 201  Q
    ||||||||||| ||||||||||||| ||||||||| ||| || ||| ||||||||| |||  || | |||   ||  | |||| |||||||||| |||||    
T  2393965 gttgagttcttggagtaaagggaaaaaatcagcaatgaaaaagagaccattcttgcagataatagtcatt--ttagaatgtgagagatgtcaaatttttt 2393868  T
Q  202 catgtttttggagaaagctcgcaacccat 230  Q
    ||| |||| ||| ||||||||||||||||    
T  2393867 catcttttgggacaaagctcgcaacccat 2393839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 266 - 455
Target Start/End: Original strand, 2477421 - 2477604
Alignment:
Q  266 agcgatttgatgtctacagggaaagtggatatattagtaagaagctcgtcgaggtcactttctgtagagaagcccgtgatgttgagggatgtgatattag 365  Q
    |||||| ||| ||||| ||  ||||||||||| |  ||||||||||| || |||||||||||| | ||||     |||||||| ||||||||||  ||||    
T  2477421 agcgatctgaggtctatagctaaagtggatatttgggtaagaagctcatcaaggtcactttctct-gaga-----gtgatgtttagggatgtgacgttag 2477514  T
Q  366 ggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaact 455  Q
    ||||||| |  |||||  || ||| | |||||||||||| |||||| ||||| |  ||||| || |||| |||||| ||||||| |||||    
T  2477515 ggaacctttgaaagagaggatgaagggaagggatggtttgatcggaaattgtcacagagaatcgaagactgttggttatggacagaaact 2477604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 2167816 - 2167860
Alignment:
Q  15 taattttgcggagtttgggaagtgccaacaaccgatcatcatcat 59  Q
    ||||||| ||||||||||||||||||||| | |||||||||||||    
T  2167816 taattttccggagtttgggaagtgccaaccatcgatcatcatcat 2167860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 2363210 - 2363162
Alignment:
Q  101 aggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagat 149  Q
    ||||||||||| ||||| ||||||||||||||||||| |||||| ||||    
T  2363210 aggttgagttcgtcgaggaaagggaaacaatcagcaatgaagaagagat 2363162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 2381690 - 2381630
Alignment:
Q  177 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtagg 237  Q
    ||||||| | ||| |||||||||||||| |||||||| |||||||| ||||||||| ||||    
T  2381690 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatctttagg 2381630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 2382975 - 2382915
Alignment:
Q  11 aaattaattttgcggagtttgggaagtgccaacaaccgatcatcatcatctagctcaaaat 71  Q
    |||||||| || |||||||||||||||||||| ||  ||| ||||||||||||| ||||||    
T  2382975 aaattaatctttcggagtttgggaagtgccaaaaattgattatcatcatctagcacaaaat 2382915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 347 - 447
Target Start/End: Complemental strand, 2391136 - 2391036
Alignment:
Q  347 ttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatgg 446  Q
    ||||||||||||| ||||| |||||  | |||||   |||||||||||||||||||||  | || |||| |||||||||| || |||  |||||||||||    
T  2391136 ttgagggatgtgacattagagaaccgttggaagatttgaggaatgaaagggatggtttgttgggtgattttgatggagaatcggagattgttggtgatgg 2391037  T
Q  447 a 447  Q
    |    
T  2391036 a 2391036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 2391318 - 2391258
Alignment:
Q  177 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtagg 237  Q
    ||||||| | ||| |||||||||||||| |||||||| |||||||| ||||||||| ||||    
T  2391318 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatctttagg 2391258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 133
Target Start/End: Complemental strand, 2625634 - 2625602
Alignment:
Q  101 aggttgagttcttcgagtaaagggaaacaatca 133  Q
    |||||||||||||||||||||||||||||||||    
T  2625634 aggttgagttcttcgagtaaagggaaacaatca 2625602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 12124412 - 12124452
Alignment:
Q  1 attacctgataaattaattttgcggagtttgggaagtgcca 41  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  12124412 attaccagataaattaatcttgcggagtttgggaagtgcca 12124452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 12126466 - 12126506
Alignment:
Q  2 ttacctgataaattaattttgcggagtttgggaagtgccaa 42  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  12126466 ttaccagataaattaatcttgcggagtttgggaagtgccaa 12126506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 328
Target Start/End: Original strand, 2486145 - 2486204
Alignment:
Q  269 gatttgatgtctacagggaaagtggatatattagtaagaagctcgtcgaggtcactttct 328  Q
    ||||||| ||| | |||||||||||| ||||  |||||||||||| ||||||||||||||    
T  2486145 gatttgaggtccaaagggaaagtggagatatgtgtaagaagctcgccgaggtcactttct 2486204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 476
Target Start/End: Original strand, 5035544 - 5035679
Alignment:
Q  341 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 440  Q
    ||||| ||||| ||||| |||||||||||||| || ||||| |||  || ||||||||| |||   || |||||| |||   |||| || ||||||||||    
T  5035544 gtgatattgagtgatgtaatattagggaacctttcaaagagacgactaaggaaagggattgttgcctcagagattttgaccaagaatcgaagacggttgg 5035643  T
Q  441 tgatggacaaaaactgtttggacacgagggagagag 476  Q
    ||||||| | ||||||||| || |||| ||| ||||    
T  5035644 tgatggagagaaactgttttgaaacgaaggaaagag 5035679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 473
Target Start/End: Complemental strand, 1517071 - 1517029
Alignment:
Q  431 agacggttggtgatggacaaaaactgtttggacacgagggaga 473  Q
    |||||||||||||||||||| || |||||||| ||||||||||    
T  1517071 agacggttggtgatggacaagaattgtttggaaacgagggaga 1517029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 2382800 - 2382747
Alignment:
Q  177 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccat 230  Q
    ||||| ||||||| ||||| |||||||| |||||||| ||||||||||| ||||    
T  2382800 aacaaatgaaagaagtcaattttttcatctttttggacaaagctcgcaatccat 2382747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 2482529 - 2482582
Alignment:
Q  177 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccat 230  Q
    ||||||||| |||||||||||||||||| ||||| || | ||||| ||||||||    
T  2482529 aacaagtgagagatgtcaaatttttcatctttttagatagagctctcaacccat 2482582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 2486066 - 2486103
Alignment:
Q  187 agatgtcaaatttttcatgtttttggagaaagctcgca 224  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  2486066 agatgtcaaatttttcatctttttggacaaagctcgca 2486103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 2460283 - 2460335
Alignment:
Q  105 tgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 157  Q
    |||||||||||||||| || |||||||||||||  ||||| |||| |||||||    
T  2460283 tgagttcttcgagtaatggaaaacaatcagcaattaagaagagatgattcttg 2460335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 2471733 - 2471785
Alignment:
Q  105 tgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 157  Q
    ||||||||||||||||||| ||||||||||| |  ||||| |||| |||||||    
T  2471733 tgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttg 2471785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 391 - 479
Target Start/End: Original strand, 12126852 - 12126940
Alignment:
Q  391 gaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggacacgagggagagaggtt 479  Q
    |||||||||  ||| ||| |||| || |||||||||  | ||||||||||||||||| | ||| |||||||| || | |||||||||||    
T  12126852 gaaagggattttttcatctgagactgcgatggagaataggagacggttggtgatggagagaaattgtttggagacaatggagagaggtt 12126940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 362 - 459
Target Start/End: Complemental strand, 2576512 - 2576415
Alignment:
Q  362 ttagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgttt 459  Q
    ||||||| ||| ||||||||||||  ||||||||||||||||  ||||| ||||||||  ||||| || ||||| ||||||||||| |||||||||||    
T  2576512 ttagggatcctttcgaagaggcgacaaatgaaagggatggttcaatcggtgattgtgaccgagaatcgaagacgattggtgatggataaaaactgttt 2576415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 362 - 462
Target Start/End: Complemental strand, 15838079 - 15837979
Alignment:
Q  362 ttagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttgg 461  Q
    ||||||||||| | |||||||  ||||||||||||||| |||| |||   |||| ||| |||||| || ||||||||||||||||| | |||||||||||    
T  15838079 ttagggaacctttggaagaggttaggaatgaaagggattgtttgatctatgattttgagggagaatcggagacggttggtgatggagagaaactgtttgg 15837980  T
Q  462 a 462  Q
    |    
T  15837979 a 15837979  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 7555124 - 7555160
Alignment:
Q  101 aggttgagttcttcgagtaaagggaaacaatcagcaa 137  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  7555124 aggttgagttcttcgagcaaagggaaacattcagcaa 7555160  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 18314771 - 18314718
Alignment:
Q  98 ctaaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatca 151  Q
    ||||||| |||||||||||| ||||||||||||||||||| || ||| ||||||    
T  18314771 ctaaggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatca 18314718  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 431 - 487
Target Start/End: Original strand, 12846948 - 12847004
Alignment:
Q  431 agacggttggtgatggacaaaaactgtttggacacgagggagagaggttccaagtaa 487  Q
    ||||||||||||||||| |  ||||| ||||| |||||||||||| |||||||||||    
T  12846948 agacggttggtgatggagaggaactgcttggaaacgagggagagatgttccaagtaa 12847004  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 28673398 - 28673354
Alignment:
Q  106 gagttcttcgagtaaagggaaacaatcagcaaggaagaatagatc 150  Q
    |||||||||||| |||||||| |||||||||| |||||| |||||    
T  28673398 gagttcttcgagcaaagggaagcaatcagcaatgaagaagagatc 28673354  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 6423906 - 6423969
Alignment:
Q  176 taacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtaggaa 239  Q
    |||||||||| ||| |||||| || | ||||||| |||||||||||||||||||| ||| ||||    
T  6423906 taacaagtgagagaggtcaaagttgttatgttttgggagaaagctcgcaacccatttgtgggaa 6423969  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 10579152 - 10579090
Alignment:
Q  177 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtaggaa 239  Q
    |||||||||||  ||||||| || | ||||||| |||||||||||| ||||||||||| ||||    
T  10579152 aacaagtgaaacttgtcaaagttgttatgttttgggagaaagctcgtaacccatctgtgggaa 10579090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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