View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12164_high_5 (Length: 514)
Name: NF12164_high_5
Description: NF12164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12164_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 30 - 473
Target Start/End: Original strand, 11119116 - 11119559
Alignment:
| Q |
30 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
129 |
Q |
| |
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||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119116 |
ccaacaactcccgataaattcgacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
11119215 |
T |
|
| Q |
130 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccggaactttataaattcaatgattaaaatgggtaatattggcgtgct |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119216 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
11119315 |
T |
|
| Q |
230 |
tactggaaagaaaggagaaattagaaagcagtgcgattttgttaacaagaaatcttctgaattggatcttgctagtgtggcctcagaatcaatggagggg |
329 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11119316 |
tactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgctagtgtgacctcagaatcaatggagggg |
11119415 |
T |
|
| Q |
330 |
gatatggttagttcaatctaaatgaatgtgggttactttagttgaaatgcatgtggtgattggaattcactaataaagaaaagtgctagctaggcacatc |
429 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119416 |
gatatggttagttcaatctaaatgaatgtgggttactttagttgaaatgcatgtggtgattggaattcactaataaagaaaagtgctagctaggcacatc |
11119515 |
T |
|
| Q |
430 |
tgtgccttgatgtgtatgttatgtgctttatgtgtgcaagataa |
473 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11119516 |
tgtgccttgatgtgtatgttatgtgctttatgtgtgcaagataa |
11119559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 30 - 433
Target Start/End: Original strand, 11111345 - 11111747
Alignment:
| Q |
30 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
129 |
Q |
| |
|
||||| |||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
11111345 |
ccaacgactcctgatacattggacaagaacttctacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattattctcaacaccgggtg |
11111444 |
T |
|
| Q |
130 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccggaactttataaattcaatgattaaaatgggtaatattggcgtgct |
229 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||| | ||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
11111445 |
cagataccattagcattgtcaacagctttgcaaatagccaaaatgttttctttcagaactttataaattcaatgattaaaatgggtaatattgatgtgct |
11111544 |
T |
|
| Q |
230 |
tactggaaagaaaggagaaattagaaagcagtgcgattttgttaacaagaaatcttctgaattggatcttgctagtgtggcct---cagaatcaatggag |
326 |
Q |
| |
|
||| ||||||||||||||||||||||| || ||| ||||| |||||||||||||||||||||||||||||| | |||||||| ||||||||||||| |
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|
| T |
11111545 |
taccggaaagaaaggagaaattagaaaacaatgcaattttattaacaagaaatcttctgaattggatcttggcattgtggcctctgcagaatcaatggaa |
11111644 |
T |
|
| Q |
327 |
ggggatatggttagttcaatctaaatgaatgtgggttactttagttgaaatgcatgtggtgattggaattcactaataaagaaaagtgctagctaggcac |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||| |||| |||| |
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|
| T |
11111645 |
ggggatatggttagttcaatctaaatgaatgtgggttactttagatgaa----atgtggtgattggaattcactaataaagagaagtgctggctaagcac |
11111740 |
T |
|
| Q |
427 |
atctgtg |
433 |
Q |
| |
|
|| |||| |
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|
| T |
11111741 |
atttgtg |
11111747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 30 - 355
Target Start/End: Complemental strand, 10793449 - 10793121
Alignment:
| Q |
30 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
129 |
Q |
| |
|
||||| |||||||||| ||| |||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||| || |
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|
| T |
10793449 |
ccaactactcctgatacattggacaagaacttctacaacaatcttcaggttaaaaagggtttgcttcaaagtgaccaagaattgttttcaacaccaaatg |
10793350 |
T |
|
| Q |
130 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccggaactttataaattcaatgattaaaatgggtaatattggcgtgct |
229 |
Q |
| |
|
||||||||| ||||||||| || ||||||| || ||||||| || |||||| || ||||| || ||||||||||||||||||||||||| ||||| |
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|
| T |
10793349 |
cagataccactagcattgttaataactttgccaataaccaaagtgctttctttgagagctttaagaaagcaatgattaaaatgggtaatattggtgtgct |
10793250 |
T |
|
| Q |
230 |
tactggaaagaaaggagaaattagaaagcagtgcgattttgttaacaagaaatcttctgaattggatcttgctagtgtgg---cctcagaatcaatggag |
326 |
Q |
| |
|
||| ||||||||||||||||| || || || ||| ||||||||||||| ||||||||||| || |||||||| | ||| || |||||||| | || |
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|
| T |
10793249 |
taccggaaagaaaggagaaataaggaaacaatgcaattttgttaacaaaaaatcttctgagttagatcttgccgctctggtctccacagaatcatttgat |
10793150 |
T |
|
| Q |
327 |
ggggatatggttagttcaatctaaatgaa |
355 |
Q |
| |
|
|||||||||||||||||||| |||||||| |
|
|
| T |
10793149 |
ggggatatggttagttcaatttaaatgaa |
10793121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 30 - 275
Target Start/End: Original strand, 11156597 - 11156842
Alignment:
| Q |
30 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
129 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| ||| ||||||||||| |||||||| ||||| |||||||| ||||| |||||||||||| | |||| |
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|
| T |
11156597 |
ccaacgactcctgataaatttgacaagaactattactccaatcttcaagtgaaaaagggcttgctccaaagtgatcaagagttgttctcaacatccggtg |
11156696 |
T |
|
| Q |
130 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccggaactttataaattcaatgattaaaatgggtaatattggcgtgct |
229 |
Q |
| |
|
||||||||||||||||||||||||| || | | | | ||||| | |||||| || ||||| | |||||||||||||||| |||||||| ||||| |
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|
| T |
11156697 |
cagataccattagcattgtcaacaaattcagcaccgatcaaaacgctttctttgagagctttaaggctgcaatgattaaaatgggcaatattggtgtgct |
11156796 |
T |
|
| Q |
230 |
tactggaaagaaaggagaaattagaaagcagtgcgattttgttaac |
275 |
Q |
| |
|
|| || | ||||||||| |||||||| || ||| | ||||||||| |
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|
| T |
11156797 |
aacagggacgaaaggagagattagaaaacaatgcaactttgttaac |
11156842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 11145960 - 11146089
Alignment:
| Q |
30 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
129 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| ||| |||||||||| ||||| ||||||||||||||||| ||||| |||||||||||| | |||| |
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|
| T |
11145960 |
ccaactactcctgataaatttgacaagaactattactctaatcttcaagtgaaaaaaggtttgcttcaaagtgatcaagagttgttctcaacatctggtg |
11146059 |
T |
|
| Q |
130 |
cagataccattagcattgtcaacaactttg |
159 |
Q |
| |
|
| |||||||||||||||||||||||||||| |
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|
| T |
11146060 |
ctgataccattagcattgtcaacaactttg |
11146089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 30 - 154
Target Start/End: Original strand, 11137655 - 11137779
Alignment:
| Q |
30 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
129 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||| | ||||| ||| | |||| |
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|
| T |
11137655 |
ccaacgactcctgataaatttgacaagaactactactccaatcttcagggtaaaaagggtttgcttcagagtgaccaagagcttttctcgacatctggtg |
11137754 |
T |
|
| Q |
130 |
cagataccattagcattgtcaacaa |
154 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
11137755 |
ctgataccattagcattgtcaacaa |
11137779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 11149929 - 11150058
Alignment:
| Q |
30 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
129 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| ||| |||||||||| |||||||||||||| |||||||| ||||| |||||||||||| | ||| |
|
|
| T |
11149929 |
ccaacgactcctgataaatttgacaagaactattactctaatcttcaagtgaaaaagggtttgctccaaagtgatcaagagttgttctcaacatctggtt |
11150028 |
T |
|
| Q |
130 |
cagataccattagcattgtcaacaactttg |
159 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
11150029 |
cagataccattagcattgtcaacaaatttg |
11150058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 201 - 274
Target Start/End: Original strand, 11137826 - 11137899
Alignment:
| Q |
201 |
atgattaaaatgggtaatattggcgtgcttactggaaagaaaggagaaattagaaagcagtgcgattttgttaa |
274 |
Q |
| |
|
||||||||||||||||||||||| ||||| || || || |||||||| |||||||| || ||| |||||||||| |
|
|
| T |
11137826 |
atgattaaaatgggtaatattggtgtgctgaccgggaaaaaaggagagattagaaaacattgcaattttgttaa |
11137899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 11183671 - 11183613
Alignment:
| Q |
82 |
aaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtgcagataccatt |
140 |
Q |
| |
|
||||||| ||| |||| ||||||||||||||||| || ||||| ||||| ||||||||| |
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|
| T |
11183671 |
aaaaggggttgtttcagagtgaccaagaattgttttccacacctggtgctgataccatt |
11183613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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