View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12164_high_7 (Length: 440)
Name: NF12164_high_7
Description: NF12164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12164_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 42890453 - 42890874
Alignment:
| Q |
1 |
atacaatgaaatcgtatatttataggtggagatgaaccttgcatggcaacaaaagaagcttagagagttttgcaacgcaaacggaatagtgttaactgca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42890453 |
atacaatgaaatcgtatatttataggtggagatgaaccttgcatggcaacaaaagaagcttagagagttttgcaacgcaaacggaatagtgttaactgca |
42890552 |
T |
|
| Q |
101 |
ttttcaccattgaggaaaggtgcaagcagaggaccaaatgaagttatggagaatgatatgcttaaagagattgcagatgcacgtggaaagtctgttgcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42890553 |
ttttcaccattgaggaaaggtgcaagcagaggaccaaatgaagttatggagaatgatatgcttaaagagattgcagatgcacatggaaagtctgttgcac |
42890652 |
T |
|
| Q |
201 |
aaatttctttaagatggctatatgaacaaggagtcacttttgttcccaagagctatgataaggaaagaatgaaccaaaatttgtgtatctttgattggtc |
300 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42890653 |
aaatttctctaagatggttatatgaacaaggagtcacttttgttcccaagagttatgataaggagagaatgaaccaaaatttgtgtatctttgattggtc |
42890752 |
T |
|
| Q |
301 |
attaacaaaagaagatcatgagaaaattgctcaaattaagcaaaaccgtctgatccctggaccaaccaagccaggcatcaatgacctctatgatgactaa |
400 |
Q |
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||| ||||| || ||||||||||| |||| ||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42890753 |
attgacaaaggaggatcatgagaagattgatcaaattaagcaaaatcgtttgatccctggaccaaccaaaccaggcatcaatgacctctatgatgactaa |
42890852 |
T |
|
| Q |
401 |
atatagaagaattgatgatgtc |
422 |
Q |
| |
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||||||||||||| |||||||| |
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| T |
42890853 |
atatagaagaattaatgatgtc |
42890874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 42874848 - 42874447
Alignment:
| Q |
1 |
atacaatgaaatcgtatatttataggtggagatgaaccttgcatggcaacaaaagaagcttagagagttttgcaacgcaaacggaatagtgttaactgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42874848 |
atacaatgaaatcgtatatttataggtggagatgaaccttgcatggcaacaaaagaagcttagagagttttgcaacgcaaacggaatagtgttaactgca |
42874749 |
T |
|
| Q |
101 |
ttttcaccattgaggaaaggtgcaagcagaggaccaaatgaagttatggagaatgatatgcttaaagagattgcagatgcacgtggaaagtctgttgcac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42874748 |
ttttcaccattgaggaaaggtgcaagcagaggaccaaatgaagttatggagaatgatatgcttaaagagattgcagatgcacatggaaagtctgttgcac |
42874649 |
T |
|
| Q |
201 |
aaatttctttaagatggctatatgaacaaggagtcacttttgttcccaagagctatgataaggaaagaatgaaccaaaatttgtgtatctttgattggtc |
300 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42874648 |
aaatttctctaagatggttatatgaacaaggagtcacttttgttcccaagagttatgataaggagagaatgaaccaaaatttgtgtatctttgattggtc |
42874549 |
T |
|
| Q |
301 |
attaacaaaagaagatcatgagaaaattgctcaaattaagcaaaaccgtctgatccctggaccaaccaagccaggcatcaatgacctctatgatgactaa |
400 |
Q |
| |
|
||| ||||| || ||||||||||| |||| ||||||||||||||| ||| ||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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|
| T |
42874548 |
attgacaaaggaggatcatgagaagattgatcaaattaagcaaaatcgtttgatccctggaccaaccaaaccaggcctcaatgacctctatgatgactaa |
42874449 |
T |
|
| Q |
401 |
at |
402 |
Q |
| |
|
|| |
|
|
| T |
42874448 |
at |
42874447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 42883979 - 42883579
Alignment:
| Q |
1 |
atacaatgaaatcgtatatttataggtggagatgaaccttgcatggcaacaaaagaagcttagagagttttgcaacgcaaacggaatagtgttaactgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42883979 |
atacaatgaaatcgtatatttataggtggagatgaaccttgcatggcaacaaaagaagcttagagagttttgcaacgcaaacggaatagtgttaactgca |
42883880 |
T |
|
| Q |
101 |
ttttcaccattgaggaaaggtgcaagcagaggaccaaatgaagttatggagaatgatatgcttaaagagattgcagatgcacgtggaaagtctgttgcac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
42883879 |
ttttcaccattgaggaaaggtgcaagcagaggaccaaatgaagttatggagaatgatatgcttaaagagattgcagatgcacatggaaagtctgttgcac |
42883780 |
T |
|
| Q |
201 |
aaatttctttaagatggctatatgaacaaggagtcacttttgttcccaagagctatgataaggaaagaatgaaccaaaatttgtgtatctttgattggtc |
300 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42883779 |
aaatttctctaagatggttatatgaacaaggagtcacttttgttcccaagagttatgataaggagagaatgaaccaaaatttgtgtatctttgattggtc |
42883680 |
T |
|
| Q |
301 |
attaacaaaagaagatcatgagaaaattgctcaaattaagcaaaaccgtctgatccctggaccaaccaagccaggcatcaatgacctctatgatgactaa |
400 |
Q |
| |
|
||| ||||| || ||||||||||| |||| ||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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|
| T |
42883679 |
attgacaaaggaggatcatgagaagattgatcaaattaagcaaaatcgtttgatccctggaccaaccaaaccaggcatcaatgacctctatgatgattaa |
42883580 |
T |
|
| Q |
401 |
a |
401 |
Q |
| |
|
| |
|
|
| T |
42883579 |
a |
42883579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 303
Target Start/End: Complemental strand, 37504208 - 37504118
Alignment:
| Q |
213 |
gatggctatatgaacaaggagtcacttttgttcccaagagctatgataaggaaagaatgaaccaaaatttgtgtatctttgattggtcatt |
303 |
Q |
| |
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||||||||||||| |||||| | |||||||| ||||||||||| ||||| || ||||||||||| ||| ||||||||||||||||| |
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| T |
37504208 |
gatggctatatgagcaaggattgacttttgtggttaagagctatgacaaggagaggatgaaccaaaacttgcaaatctttgattggtcatt |
37504118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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