View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12164_high_9 (Length: 390)
Name: NF12164_high_9
Description: NF12164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12164_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 23 - 386
Target Start/End: Complemental strand, 40566069 - 40565706
Alignment:
| Q |
23 |
catcagcagcaattgttttgagtgcacagccatggctttgctannnnnnncaggttcatcggtatacaaatccttagattttgtttagtatttatttatt |
122 |
Q |
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| T |
40566069 |
catcagcagcaattgttttgagtgcacagccatggctttgctatttttttcaggttcatcggtatacaaatccttagattttgtttagtatttatttatt |
40565970 |
T |
|
| Q |
123 |
ctccttgtaaccttaataatagaaaagtcaaaatgattgaattttcctgtatggaatggaatgatcaaattaaacacggttttgtctaacatttattata |
222 |
Q |
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| T |
40565969 |
ctccttgtaaccttaataatagaaaagtcaaaatgattgaattttcctgtatggaatggaatgatcaaattaaacacggttttgtctaacatttattata |
40565870 |
T |
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| Q |
223 |
atgtaactttagtttttggtaacagtgattgcaatgtctctaatcagttgtttaagttttaaaagtagaataggtcagaactcagaatgcacacctgtgt |
322 |
Q |
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| T |
40565869 |
atgtaactttagtttttggtaacagtgattgcaatgtctctaatcagttgtttaagttttaaaagtagaataggtcagaactcagaatgcacacctgtgt |
40565770 |
T |
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| Q |
323 |
tagcaaaatgaaattaattaaacattatcaaaagctagcatgcttagagacactgcaattacta |
386 |
Q |
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| T |
40565769 |
tagcaaaatgaaattaattaaacattatcaaaagctagcatgcttagagacattgcaattacta |
40565706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 135 - 299
Target Start/End: Complemental strand, 40570650 - 40570490
Alignment:
| Q |
135 |
ttaataatagaaaagtcaaaatgattgaattttcctgtatggaatggaatgatcaaattaaacacggttttgtctaacatttattataatgtaactttag |
234 |
Q |
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| T |
40570650 |
ttaaaaatagaaaaatcaaaatgactgatttttcct--acggaatcgaatgatcaaattaag-atggtct-gtctaatatttattttaatgtaactttag |
40570555 |
T |
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| Q |
235 |
tttttggtaacagtgattgcaatgtctctaatcagttgtttaagttttaaaagtagaataggtca |
299 |
Q |
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| T |
40570554 |
tttttggcaacagtgattgcaacgtttctaactagttgtttaagatttaaaggtagaacaggtca |
40570490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 40595321 - 40595253
Alignment:
| Q |
143 |
agaaaagtcaaaatgattgaattttcctgtatggaatggaatgatcaaattaaacacggttttgtctaa |
211 |
Q |
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| T |
40595321 |
agaaaagtcaaaatgaatgatttttgttgtacagattggaatgatgaaattaaacatggttttgtctaa |
40595253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 8490271 - 8490224
Alignment:
| Q |
213 |
atttattataatgtaactttagtttttggtaacagtgattgcaatgtc |
260 |
Q |
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| T |
8490271 |
atttattataatgtaactttagtttttggcaacagtgattgcaatgtc |
8490224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 8490376 - 8490288
Alignment:
| Q |
135 |
ttaataatagaaaagtcaaaatgattgaattttcctgtatggaatggaatgatcaaattaaacacggttttgtctaacatttattataatgt |
226 |
Q |
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|||| ||||||||||||||||||| ||| |||||| |||||||| ||||||||||||| || | ||||||||||| |||||||||||||| |
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| T |
8490376 |
ttaaaaatagaaaagtcaaaatgactgatttttcc--tatggaattgaatgatcaaatt-aagatggttttgtctattatttattataatgt |
8490288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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