View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12165_high_1 (Length: 496)
Name: NF12165_high_1
Description: NF12165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12165_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 7 - 304
Target Start/End: Complemental strand, 29008942 - 29008645
Alignment:
| Q |
7 |
agcagcacagacacaataaaactcagcaagtgcactactaactgagttatcaaaatcaaaaccatccttaatgtaaagtccatgaacaaccttccctgca |
106 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29008942 |
agcatcacaaacacaataaaactcagcaagtgcactactaactgagttatcaaaatcaaaaccatccttaatgtaaagtccatgaacaaccttccctgca |
29008843 |
T |
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| Q |
107 |
tacagaatcctaagtttagcacaaattcttataacacaatccaaagtgaactcgttaggcaacaccaaggtactgcttataaccaattatatcgtaccat |
206 |
Q |
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| T |
29008842 |
tacagaatcctaagtctagcacaaattcttataacacaatccaaagtgaactcattaggcaacaccaagttactgcttataaccaattgtatcgtaccat |
29008743 |
T |
|
| Q |
207 |
gttataagagtttaacttgaacaaaaggttgtatgtgtatgtcttcctccttctgaatctgaaagatcaagtttattattgttccttagaactagtta |
304 |
Q |
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| T |
29008742 |
gttataagagtttaacttgaacaaaatgttgtatgtgtatgtcttcctccttctgaatctgaaagatcaagtttattattgttcctaagaactagtta |
29008645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 311 - 480
Target Start/End: Complemental strand, 29008063 - 29007894
Alignment:
| Q |
311 |
tattatttcacactattgtcttttggcaattttgccaaatagaaaggttttttaatggttggcaattttgcaaaagaaaatgatagaaatgcattaactg |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29008063 |
tattatttcacactattgtcttttggcaattttgccaaatagaaaggttttttaatggttggcaattttgcaaaagaaaatgatagaaatgcattaactg |
29007964 |
T |
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| Q |
411 |
cataataggataaggattaagttaagatatgccaaccatgatatgagtatttttatggcaagtcatgttt |
480 |
Q |
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| T |
29007963 |
cataatagcataaggattaagttaagatatgccaaccatgatatgagtatttttatggcaagtcatgttt |
29007894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 300 - 480
Target Start/End: Complemental strand, 29010502 - 29010323
Alignment:
| Q |
300 |
agttagaattttattatttcacactattgtcttttggcaattttgccaaatagaaa-ggttttttaatggttggcaattttgcaaaagaaaatgatagaa |
398 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||||||||||| ||| |||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
29010502 |
agttagaattttattatttcac-ctattg-cttttggcaattttgccaaataaaaaaggtttttttatggttggcaattttgcaagagaaaatgatagaa |
29010405 |
T |
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| Q |
399 |
atgcattaactgcataataggataaggattaagttaagatatgccaaccatgatatgagtatttttatggcaagtcatgttt |
480 |
Q |
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| T |
29010404 |
atgcatcaactgcataacagcataacgattaagttaagatatgccaaccatgatatgagtatttttatggcaagtcatgttt |
29010323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 203 - 279
Target Start/End: Complemental strand, 29010573 - 29010499
Alignment:
| Q |
203 |
ccatgttataagagtttaacttgaacaaaaggttgtatgtgtatgtcttcctccttctgaatctgaaagatcaagtt |
279 |
Q |
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| T |
29010573 |
ccatgttacaagagtttaacttgaacaaaatgttgta--tgtatgtcttcctctgtcagaatctgaaagatcaagtt |
29010499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 34146464 - 34146619
Alignment:
| Q |
17 |
acacaataaaactcagcaagtgcactactaactgagttatcaaaatcaaaaccatccttaatgtaaagtccatgaacaaccttccctgcatacagaatcc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
34146464 |
acacaataaaactcagcaagtgcactactaactgagttatcaaaatcaaaaccatccttaatgcaaagtccatgaacaaccttcccaacatacagaatcc |
34146563 |
T |
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| Q |
117 |
taagtttagcacaaattcttataacacaatccaaagtgaactcgttaggcaacacc |
172 |
Q |
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||||| ||||||||| || | ||||||||||||||||||||| |||||||||||| |
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| T |
34146564 |
taagtctagcacaaaccctcaaaacacaatccaaagtgaactcattaggcaacacc |
34146619 |
T |
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