View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12165_low_2 (Length: 376)
Name: NF12165_low_2
Description: NF12165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12165_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 161; Significance: 9e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 175 - 355
Target Start/End: Original strand, 24202106 - 24202286
Alignment:
| Q |
175 |
aataaccaacttgttgaaatatgtaataatcttttgagggacaaattaaatgttttgaaaatctttctagtatcaaaatggggtttaccttaaaatcatg |
274 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24202106 |
aataaccaacttgttgaaacatgtaataatcttttgagggacaaataaaatgttttgaaaatctttctagtatcaaaatggggtttaccttaaaatcatg |
24202205 |
T |
|
| Q |
275 |
ttggggcatctctggctgatagaattgtacaaagaatatctttagcacgttgttcatcttttgttattttcatgactggtt |
355 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
24202206 |
ttggggcatctctggctgctagaattgtacaaagaatatctttagcatgttgttcatcttttgttattttcatgaatggtt |
24202286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 200 - 349
Target Start/End: Complemental strand, 36673270 - 36673121
Alignment:
| Q |
200 |
ataatcttttgagggacaaattaaatgttttgaaaatctttctagtatcaaaatggggtttaccttaaaatcatgttggggcatctctggctgatagaat |
299 |
Q |
| |
|
||||||||||||||| || ||| || |||||||||||||||| | ||||||||||||||||||| |||||| |||||||||||||||||||| || ||| |
|
|
| T |
36673270 |
ataatcttttgagggccagattgaaggttttgaaaatctttcaaatatcaaaatggggtttaccataaaattatgttggggcatctctggcttctataat |
36673171 |
T |
|
| Q |
300 |
tgtacaaagaatatctttagcacgttgttcatcttttgttattttcatga |
349 |
Q |
| |
|
||||||||||| |||| |||||| ||||||| | |||||||||| |||| |
|
|
| T |
36673170 |
tgtacaaagaacttcttaagcacgatgttcatttcttgttattttgatga |
36673121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 41946753 - 41946792
Alignment:
| Q |
23 |
taatattggttctcttacgaataaacatgatagtgggtga |
62 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41946753 |
taatattggttctcttgagaataaacatgatagtgggtga |
41946792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 198 - 343
Target Start/End: Complemental strand, 29413901 - 29413757
Alignment:
| Q |
198 |
taataatcttttgagggacaaattaaatgttttgaaaatctttctagtatcaaaatggggtttaccttaaaatcatgttggggcatctctggctgataga |
297 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||| |||| | || | |||||||||| |||| || | |
|
|
| T |
29413901 |
taataatcttttgagggacaaattgaatgttttgaaaatctttcgagtatctaaatggggtttaccataaagttatagtagggcatctct-gctgctata |
29413803 |
T |
|
| Q |
298 |
attgtacaaagaatatctttagcacgttgttcatcttttgttattt |
343 |
Q |
| |
|
|||||||| |||| |||||| ||||||||||||| | ||||||||| |
|
|
| T |
29413802 |
attgtacagagaacatctttggcacgttgttcatttcttgttattt |
29413757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 202 - 322
Target Start/End: Complemental strand, 26930375 - 26930256
Alignment:
| Q |
202 |
aatcttttgagggacaaattaaatgttttgaaaatctttctagtatcaaaatggggtttaccttaaaatcatgttggggcatctctggctgatagaattg |
301 |
Q |
| |
|
||||||||||||| | ||| ||||||||||||||||||| ||||||| |||||| |||||| |||||| ||||||||||||||||||||| || ||||| |
|
|
| T |
26930375 |
aatcttttgagggcaacattgaatgttttgaaaatctttcgagtatcacaatggg-tttaccataaaattatgttggggcatctctggctgctacaattg |
26930277 |
T |
|
| Q |
302 |
tacaaagaatatctttagcac |
322 |
Q |
| |
|
|||| ||||||| ||| |||| |
|
|
| T |
26930276 |
tacagagaatatgtttggcac |
26930256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 277
Target Start/End: Complemental strand, 26963301 - 26963226
Alignment:
| Q |
202 |
aatcttttgagggacaaattaaatgttttgaaaatctttctagtatcaaaatggggtttaccttaaaatcatgttg |
277 |
Q |
| |
|
|||||||||| || || ||| |||||||||||||| |||| ||||| ||||||||||||| | |||||| |||||| |
|
|
| T |
26963301 |
aatcttttgaaggccacattgaatgttttgaaaatatttcgagtataaaaatggggtttatcataaaattatgttg |
26963226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 292
Target Start/End: Original strand, 26940753 - 26940841
Alignment:
| Q |
202 |
aatcttttgagggacaaattaaatgttttgaaaatctttctagtatcaaaatggggtttaccttaaaatcatgttggggcatctctggctg |
292 |
Q |
| |
|
||||||||||||| || ||| ||| ||||| ||| |||| ||||| ||||||||||||| | |||||| |||||| ||||||| |||||| |
|
|
| T |
26940753 |
aatcttttgagggccacattgaat--tttgagaatatttcgagtataaaaatggggtttatcataaaattatgttgcggcatctttggctg |
26940841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 1722529 - 1722607
Alignment:
| Q |
23 |
taatattggttctcttacgaataaacatga---tagtgggtgataaatgataaagaacatacagtgagtcaaggagaaat |
99 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||| ||||||||||| ||| |||||||| |||||||||||||||| |
|
|
| T |
1722529 |
taatattggttctcttacgaatgaacatgatagtagtgagtgataaatgacaaa-aacatacaatgagtcaaggagaaat |
1722607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 1738639 - 1738688
Alignment:
| Q |
125 |
actgccactgtagttgtgacaagtaagacaataaactaactgagacaaac |
174 |
Q |
| |
|
|||||||||| || |||||||||||||||||||| ||||||| |||||| |
|
|
| T |
1738639 |
actgccactgcagctgtgacaagtaagacaataagataactgaaacaaac |
1738688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University