View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12165_low_3 (Length: 296)
Name: NF12165_low_3
Description: NF12165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12165_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 12492757 - 12493019
Alignment:
| Q |
18 |
tgagaagttattgaagtatgttttgtggtctaatgggaaagaaactgaagagccttctgtggggaataaacaatgtcctgggaagaatcttgttgtgctt |
117 |
Q |
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| T |
12492757 |
tgagaagttattgaagtatgttttgtggtctaatgggaaagaaactgaagagccttctgtggggaataaacaatgtcctgggaagaatcttgttgtgctt |
12492856 |
T |
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| Q |
118 |
ttgtgtagattgttattggtggagtttttcttgcgttatgatacttttgagaatgagactaaaaataatgcttttggtgctgctgtttccattacttcac |
217 |
Q |
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| T |
12492857 |
ttgtgtagattgttattggtggagtttttcttgcgttatgatacttttgagaatgagactaaaaataatgcttttggtgctgctgtttccattacttcac |
12492956 |
T |
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| Q |
218 |
tcaccaaggcttctagtgtttgaatttgtttttgcatttcgtttatagttcttgttttgttct |
280 |
Q |
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| T |
12492957 |
tcaccaaggcttctagtgtttgaatttgattttgcatttcgtttatagttattgttttgttct |
12493019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 12507687 - 12507897
Alignment:
| Q |
18 |
tgagaagttattgaagtatgttttgtggtctaatgggaaagaaactgaagagccttctgtggggaataaacaatgtcctgggaagaatcttgttgtgctt |
117 |
Q |
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| T |
12507687 |
tgagaagttgttgaaatatgttttatggtcgaatgggagagaaactgagaaccctactgtcgataataaacaatgtcctgcgaagaatcttgttgtgctt |
12507786 |
T |
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| Q |
118 |
ttgtgtagattgttattggtggagtttttcttgcgttatgatacttttgagaatgagactaaaaataatgcttttggtgctgctgtttccattacttcac |
217 |
Q |
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| T |
12507787 |
ttgtgtaaattgtttttggtggtgtttttcttgcgatatgatacttttacgtttgagactaaagatgctgttattggtgtttctattaccattacttccc |
12507886 |
T |
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| Q |
218 |
tcaccaaggct |
228 |
Q |
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| T |
12507887 |
tcacaaaggct |
12507897 |
T |
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