View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12167_high_4 (Length: 310)

Name: NF12167_high_4
Description: NF12167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12167_high_4
NF12167_high_4
[»] chr7 (10 HSPs)
chr7 (11-227)||(36613750-36613965)
chr7 (223-281)||(36613560-36613618)
chr7 (93-123)||(4604778-4604808)
chr7 (93-123)||(49029507-49029537)
chr7 (94-123)||(7220987-7221016)
chr7 (93-129)||(2885743-2885779)
chr7 (96-128)||(14057704-14057736)
chr7 (96-128)||(14367732-14367764)
chr7 (95-123)||(15682405-15682433)
chr7 (140-188)||(30200032-30200080)
[»] chr3 (8 HSPs)
chr3 (93-179)||(388283-388369)
chr3 (93-128)||(52882683-52882718)
chr3 (93-123)||(45834621-45834651)
chr3 (93-123)||(47555353-47555383)
chr3 (93-129)||(24778630-24778666)
chr3 (100-188)||(36304132-36304220)
chr3 (92-128)||(46148254-46148290)
chr3 (93-129)||(50960658-50960694)
[»] chr5 (2 HSPs)
chr5 (93-129)||(41894298-41894334)
chr5 (93-125)||(1287600-1287632)
[»] chr4 (6 HSPs)
chr4 (93-188)||(25574990-25575085)
chr4 (93-123)||(13805286-13805316)
chr4 (93-123)||(54470438-54470468)
chr4 (93-130)||(7947161-7947198)
chr4 (93-129)||(50862856-50862892)
chr4 (95-123)||(55579262-55579290)
[»] chr2 (3 HSPs)
chr2 (93-128)||(9496092-9496127)
chr2 (93-123)||(7326181-7326211)
chr2 (93-129)||(3720436-3720472)
[»] chr1 (9 HSPs)
chr1 (93-128)||(40568431-40568466)
chr1 (93-123)||(2914144-2914174)
chr1 (93-123)||(4001476-4001506)
chr1 (93-123)||(15086153-15086183)
chr1 (93-123)||(42337787-42337817)
chr1 (95-129)||(50257795-50257829)
chr1 (93-123)||(51602287-51602317)
chr1 (93-129)||(4590553-4590589)
chr1 (93-129)||(43481819-43481855)
[»] scaffold0392 (1 HSPs)
scaffold0392 (93-123)||(6793-6823)
[»] chr8 (3 HSPs)
chr8 (93-123)||(14742859-14742889)
chr8 (93-123)||(40813555-40813585)
chr8 (93-129)||(45419460-45419496)
[»] chr6 (1 HSPs)
chr6 (70-123)||(3206456-3206510)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 36613965 - 36613750
Alignment:
11 caaagggaagcgacgcaaccataaccataatttaaatccttgatcaagttatccacaacacaacaacaattatcatgtcttacccactaagtggggttgg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
36613965 caaagggaagcgacgcaaccataaccataatttaaatccttgatcaagttatccacaacacaacaacaattatcatgtcttacccactaagtggggttgg 36613866  T
111 ctacatggatcaacttacatcgcaatctcctatcatataccgtatttatatcgaacacgttaatctctagatatttctgaatggttagtttttcggggtc 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
36613865 ctacatggatcaacttacatcgcaatctcctatcatataccgtatttatatccaacacgttaatctctagatatttctgaatggttagtttttccgggtc 36613766  T
211 ttccccccttgcatata 227  Q
    ||| |||||||||||||    
36613765 ttc-ccccttgcatata 36613750  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 223 - 281
Target Start/End: Complemental strand, 36613618 - 36613560
Alignment:
223 atataaacattgaacaaacacatagggacattgaattccaaccaatgaataaacaaaca 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
36613618 atataaacattgaacaaacacatagggacattgaattccaaccaatgaataaacaaaca 36613560  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 123
Target Start/End: Complemental strand, 4604808 - 4604778
Alignment:
93 cccactaagtggggttggctacatggatcaa 123  Q
    |||||||||||||||||||||||||||||||    
4604808 cccactaagtggggttggctacatggatcaa 4604778  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 123
Target Start/End: Complemental strand, 49029537 - 49029507
Alignment:
93 cccactaagtggggttggctacatggatcaa 123  Q
    |||||||||||||||||||||||||||||||    
49029537 cccactaagtggggttggctacatggatcaa 49029507  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 123
Target Start/End: Complemental strand, 7221016 - 7220987
Alignment:
94 ccactaagtggggttggctacatggatcaa 123  Q
    ||||||||||||||||||||||||||||||    
7221016 ccactaagtggggttggctacatggatcaa 7220987  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 2885743 - 2885779
Alignment:
93 cccactaagtggggttggctacatggatcaacttaca 129  Q
    ||||||||||||||| ||||||||||||||| |||||    
2885743 cccactaagtggggtcggctacatggatcaaattaca 2885779  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 128
Target Start/End: Complemental strand, 14057736 - 14057704
Alignment:
96 actaagtggggttggctacatggatcaacttac 128  Q
    |||||||||||||||||||||||||||| ||||    
14057736 actaagtggggttggctacatggatcaaattac 14057704  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 128
Target Start/End: Complemental strand, 14367764 - 14367732
Alignment:
96 actaagtggggttggctacatggatcaacttac 128  Q
    |||||||||||||||||||||||||||| ||||    
14367764 actaagtggggttggctacatggatcaaattac 14367732  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 15682433 - 15682405
Alignment:
95 cactaagtggggttggctacatggatcaa 123  Q
    |||||||||||||||||||||||||||||    
15682433 cactaagtggggttggctacatggatcaa 15682405  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 30200032 - 30200080
Alignment:
140 ctatcatataccgtatttatatcgaacacgttaatctctagatatttct 188  Q
    |||||||||||| |||||||||| ||| | ||||||||||||| |||||    
30200032 ctatcatataccatatttatatcaaactcattaatctctagatctttct 30200080  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 179
Target Start/End: Original strand, 388283 - 388369
Alignment:
93 cccactaagtggggttggctacatggatcaacttacatcgcaatctcctatcatataccgtatttatatcgaacacgttaatctcta 179  Q
    |||||||||||||||||||||||| |||||| |||| ||  |||   |||||||||||||||||| ||||  || | ||||||||||    
388283 cccactaagtggggttggctacattgatcaaattacgtcataatgctctatcatataccgtatttctatcttactcattaatctcta 388369  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 52882683 - 52882718
Alignment:
93 cccactaagtggggttggctacatggatcaacttac 128  Q
    ||||||||||||||||||||||||||||||| ||||    
52882683 cccactaagtggggttggctacatggatcaaattac 52882718  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 123
Target Start/End: Original strand, 45834621 - 45834651
Alignment:
93 cccactaagtggggttggctacatggatcaa 123  Q
    |||||||||||||||||||||||||||||||    
45834621 cccactaagtggggttggctacatggatcaa 45834651  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 123
Target Start/End: Original strand, 47555353 - 47555383
Alignment:
93 cccactaagtggggttggctacatggatcaa 123  Q
    |||||||||||||||||||||||||||||||    
47555353 cccactaagtggggttggctacatggatcaa 47555383  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 24778630 - 24778666
Alignment:
93 cccactaagtggggttggctacatggatcaacttaca 129  Q
    ||||||||||||||| ||||||||||||||| |||||    
24778630 cccactaagtggggtcggctacatggatcaaattaca 24778666  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 36304220 - 36304132
Alignment:
100 agtggggttggctacatggatcaacttacatcgcaatctcctatcatataccgtatttatatcgaacacgttaatctctagatatttct 188  Q
    |||||||| ||||||||||||||| ||||  |  ||| |||||||||| ||| |||||  ||| ||| | ||||||||||||| |||||    
36304220 agtggggtcggctacatggatcaaattacgccataatgtcctatcataaaccatattttgatccaactcattaatctctagatctttct 36304132  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 46148290 - 46148254
Alignment:
92 acccactaagtggggttggctacatggatcaacttac 128  Q
    |||||||||||||||| ||||||||||||||| ||||    
46148290 acccactaagtggggtcggctacatggatcaaattac 46148254  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 50960658 - 50960694
Alignment:
93 cccactaagtggggttggctacatggatcaacttaca 129  Q
    ||||||||||||||||||||| ||||||||| |||||    
50960658 cccactaagtggggttggctaaatggatcaaattaca 50960694  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 41894334 - 41894298
Alignment:
93 cccactaagtggggttggctacatggatcaacttaca 129  Q
    ||||||||||||||||||||||||||||||| |||||    
41894334 cccactaagtggggttggctacatggatcaaattaca 41894298  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 125
Target Start/End: Original strand, 1287600 - 1287632
Alignment:
93 cccactaagtggggttggctacatggatcaact 125  Q
    ||||||||||||||| |||||||||||||||||    
1287600 cccactaagtggggtcggctacatggatcaact 1287632  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 188
Target Start/End: Complemental strand, 25575085 - 25574990
Alignment:
93 cccactaagtggggttggctacatggatcaacttacatcgcaatctcctatcatataccgtatttatatcgaacacgttaatctctagatatttct 188  Q
    |||||||| ||||||  |||||||||||||| ||||| | |||| | |||||||| ||| |||||  ||| ||| | ||||||||||||| |||||    
25575085 cccactaaatggggtctgctacatggatcaaattacaccacaatgttctatcataaaccatatttcgatccaactcattaatctctagatctttct 25574990  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 123
Target Start/End: Original strand, 13805286 - 13805316
Alignment:
93 cccactaagtggggttggctacatggatcaa 123  Q
    |||||||||||||||||||||||||||||||    
13805286 cccactaagtggggttggctacatggatcaa 13805316  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 123
Target Start/End: Complemental strand, 54470468 - 54470438
Alignment:
93 cccactaagtggggttggctacatggatcaa 123  Q
    |||||||||||||||||||||||||||||||    
54470468 cccactaagtggggttggctacatggatcaa 54470438  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 7947198 - 7947161
Alignment:
93 cccactaagtggggttggctacatggatcaacttacat 130  Q
    ||||||||||||||| ||||||||||||||| ||||||    
7947198 cccactaagtggggtcggctacatggatcaaattacat 7947161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 50862892 - 50862856
Alignment:
93 cccactaagtggggttggctacatggatcaacttaca 129  Q
    ||||||||||||||| ||||||||||||||| |||||    
50862892 cccactaagtggggtcggctacatggatcaaattaca 50862856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 55579290 - 55579262
Alignment:
95 cactaagtggggttggctacatggatcaa 123  Q
    |||||||||||||||||||||||||||||    
55579290 cactaagtggggttggctacatggatcaa 55579262  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 128
Target Start/End: Complemental strand, 9496127 - 9496092
Alignment:
93 cccactaagtggggttggctacatggatcaacttac 128  Q
    ||||||||||||||||||||||||||||||| ||||    
9496127 cccactaagtggggttggctacatggatcaaattac 9496092  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 123
Target Start/End: Original strand, 7326181 - 7326211
Alignment:
93 cccactaagtggggttggctacatggatcaa 123  Q
    |||||||||||||||||||||||||||||||    
7326181 cccactaagtggggttggctacatggatcaa 7326211  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 3720436 - 3720472
Alignment:
93 cccactaagtggggttggctacatggatcaacttaca 129  Q
    ||||||||||||||| ||||||||||||||| |||||    
3720436 cccactaagtggggtcggctacatggatcaaattaca 3720472  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 40568431 - 40568466
Alignment:
93 cccactaagtggggttggctacatggatcaacttac 128  Q
    ||||||||||||||||||||||||||||||| ||||    
40568431 cccactaagtggggttggctacatggatcaaattac 40568466  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 123
Target Start/End: Original strand, 2914144 - 2914174
Alignment:
93 cccactaagtggggttggctacatggatcaa 123  Q
    |||||||||||||||||||||||||||||||    
2914144 cccactaagtggggttggctacatggatcaa 2914174  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 123
Target Start/End: Original strand, 4001476 - 4001506
Alignment:
93 cccactaagtggggttggctacatggatcaa 123  Q
    |||||||||||||||||||||||||||||||    
4001476 cccactaagtggggttggctacatggatcaa 4001506  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 123
Target Start/End: Complemental strand, 15086183 - 15086153
Alignment:
93 cccactaagtggggttggctacatggatcaa 123  Q
    |||||||||||||||||||||||||||||||    
15086183 cccactaagtggggttggctacatggatcaa 15086153  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 123
Target Start/End: Complemental strand, 42337817 - 42337787
Alignment:
93 cccactaagtggggttggctacatggatcaa 123  Q
    |||||||||||||||||||||||||||||||    
42337817 cccactaagtggggttggctacatggatcaa 42337787  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 129
Target Start/End: Complemental strand, 50257829 - 50257795
Alignment:
95 cactaagtggggttggctacatggatcaacttaca 129  Q
    ||||||||||||||||||||||||||||| |||||    
50257829 cactaagtggggttggctacatggatcaaattaca 50257795  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 123
Target Start/End: Complemental strand, 51602317 - 51602287
Alignment:
93 cccactaagtggggttggctacatggatcaa 123  Q
    |||||||||||||||||||||||||||||||    
51602317 cccactaagtggggttggctacatggatcaa 51602287  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 4590553 - 4590589
Alignment:
93 cccactaagtggggttggctacatggatcaacttaca 129  Q
    ||||||||||||||| ||||||||||||||| |||||    
4590553 cccactaagtggggtcggctacatggatcaaattaca 4590589  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 43481819 - 43481855
Alignment:
93 cccactaagtggggttggctacatggatcaacttaca 129  Q
    ||||||||||||||| ||||||||||||||| |||||    
43481819 cccactaagtggggtcggctacatggatcaaattaca 43481855  T

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Target: scaffold0392 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0392
Description:

Target: scaffold0392; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 123
Target Start/End: Original strand, 6793 - 6823
Alignment:
93 cccactaagtggggttggctacatggatcaa 123  Q
    |||||||||||||||||||||||||||||||    
6793 cccactaagtggggttggctacatggatcaa 6823  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 123
Target Start/End: Original strand, 14742859 - 14742889
Alignment:
93 cccactaagtggggttggctacatggatcaa 123  Q
    |||||||||||||||||||||||||||||||    
14742859 cccactaagtggggttggctacatggatcaa 14742889  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 123
Target Start/End: Complemental strand, 40813585 - 40813555
Alignment:
93 cccactaagtggggttggctacatggatcaa 123  Q
    |||||||||||||||||||||||||||||||    
40813585 cccactaagtggggttggctacatggatcaa 40813555  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 45419496 - 45419460
Alignment:
93 cccactaagtggggttggctacatggatcaacttaca 129  Q
    ||||||||||||||| ||||||||||||||| |||||    
45419496 cccactaagtggggtcggctacatggatcaaattaca 45419460  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 3206456 - 3206510
Alignment:
70 acaacaacaattatcatgtctta-cccactaagtggggttggctacatggatcaa 123  Q
    ||||||||||| | || |||||| ||||||||||||||| |||||||||||||||    
3206456 acaacaacaataaccaagtcttatcccactaagtggggtcggctacatggatcaa 3206510  T

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