View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12167_low_2 (Length: 395)
Name: NF12167_low_2
Description: NF12167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12167_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 142 - 382
Target Start/End: Complemental strand, 5508974 - 5508734
Alignment:
| Q |
142 |
ccttaattacctccttcttgccaatgttttgtgtgacttcctctagttgagtcgagtctgaaatccctgattccagcaacatctgcatggagttcagcaa |
241 |
Q |
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| T |
5508974 |
ccttaattacctccttcttgccaatgttttgtgtgacttcctctagttgagttgagtctgaaatccctgacttcagcaacatctgcatggagttcagcaa |
5508875 |
T |
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| Q |
242 |
ggaacttggcacaatcttcaaatcatcagacactagaaacatttgttcactttttgtatcaaagaatccattagaggcatgattcccctgacccttagag |
341 |
Q |
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| T |
5508874 |
ggaacttggcaaaatcttcaaatcatcagacactagaaacatttgttcactttttgtatcaaagaatccattagaggcatgattcccctgaccctcagag |
5508775 |
T |
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| Q |
342 |
tccaaattcttaggttgtctattaggaggtttcccacaggt |
382 |
Q |
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| T |
5508774 |
tccaaattcttaggttgtctattaggaggttttccacaggt |
5508734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 146 - 382
Target Start/End: Complemental strand, 5487721 - 5487485
Alignment:
| Q |
146 |
aattacctccttcttgccaatgttttgtgtgacttcctctagttgagtcgagtctgaaatccctgattccagcaacatctgcatggagttcagcaaggaa |
245 |
Q |
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| T |
5487721 |
aattacctcattcttgccaatgttgtgtgtgacttcctctagttgagtcaagtctggataccaggattcaatcaacatctgcacggaggacagcaaggag |
5487622 |
T |
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| Q |
246 |
cttggcacaatcttcaaatcatcagacactagaaacatttgttcactttttgtatcaaagaatccattagaggcatgattcccctgacccttagagtcca |
345 |
Q |
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| T |
5487621 |
tctgtcacaatcttcaaatcatcagacaccagaaacaatgatccattttctcttacaaagaccccattttgggcattattcccttgaccatcagagtcca |
5487522 |
T |
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| Q |
346 |
aattcttaggttgtctattaggaggtttcccacaggt |
382 |
Q |
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| T |
5487521 |
aattcttaggctgtttattaatgggttttccacaggt |
5487485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 147 - 282
Target Start/End: Original strand, 5458332 - 5458467
Alignment:
| Q |
147 |
attacctccttcttgccaatgttttgtgtgacttcctctagttgagtcgagtctgaaatccctgattccagcaacatctgcatggagttcagcaaggaac |
246 |
Q |
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|||||||||| ||||||||||| |||||||||||||||| ||||||| |||||||| || |||||| ||| | ||||||||| ||| |||||| |
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| T |
5458332 |
attacctcctgtttgccaatgttgtgtgtgacttcctctatttgagtcaagtctgaataacccaattccatcaatagctgcatggaagtcacagaggaac |
5458431 |
T |
|
| Q |
247 |
ttggcacaatcttcaaatcatcagacactagaaaca |
282 |
Q |
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| T |
5458432 |
ttggcacaatctttaaatcatcggacaccagaaaca |
5458467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 159 - 284
Target Start/End: Original strand, 5437003 - 5437128
Alignment:
| Q |
159 |
ttgccaatgttttgtgtgacttcctctagttgagtcgagtctgaaatccctgattccagcaacatctgcatggagttcagcaaggaacttggcacaatct |
258 |
Q |
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||||||||||| |||||||||||||||| ||||||| | |||||| ||| |||||| ||||| ||||| | | ||| | |||||||||||||||| |
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| T |
5437003 |
ttgccaatgttgtgtgtgacttcctctaattgagtcaaatctgaataccccaattccatcaacagctgcaagtatgtcacagaagaacttggcacaatct |
5437102 |
T |
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| Q |
259 |
tcaaatcatcagacactagaaacatt |
284 |
Q |
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| T |
5437103 |
ttaaatcatcagacaccagaaacatt |
5437128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 274
Target Start/End: Original strand, 5998977 - 5999102
Alignment:
| Q |
149 |
tacctccttcttgccaatgttttgtgtgacttcctctagttgagtcgagtctgaaatccctgattccagcaacatctgcatggagttcagcaaggaactt |
248 |
Q |
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|||||||| || |||||||| || || |||||||||| |||| || | || ||| ||| |||||| ||||||||||||||| ||| ||| ||||| |
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| T |
5998977 |
tacctcctgttttccaatgttgtgagtaacttcctctaattgactcaaatcagaataccccaattccatcaacatctgcatggaactcaccaaagaacta |
5999076 |
T |
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| Q |
249 |
ggcacaatcttcaaatcatcagacac |
274 |
Q |
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| T |
5999077 |
ggcacaatcttcaaatcatcatacac |
5999102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 5447236 - 5447293
Alignment:
| Q |
146 |
aattacctccttcttgccaatgttttgtgtgacttcctctagttgagtcgagtctgaa |
203 |
Q |
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||||||||| | |||| ||||||| ||||||| |||||||||||||||| | |||||| |
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| T |
5447236 |
aattacctcttgcttgtcaatgttgtgtgtgatttcctctagttgagtcaaatctgaa |
5447293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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