View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12168_high_1 (Length: 374)
Name: NF12168_high_1
Description: NF12168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12168_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 15 - 358
Target Start/End: Original strand, 25867417 - 25867760
Alignment:
| Q |
15 |
gagaaggaagctaccttttgatctatataagcagcccagaatctagcaactgctctatcataagtatcagaagggagaatggaaggagcacttgaccaag |
114 |
Q |
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| T |
25867417 |
gagaaagaagctaccttttgatctatataagcagcccagaatctagcaactgctctatcataagtatcagaagggagaatggaaggagcactggaccatg |
25867516 |
T |
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| Q |
115 |
tttcatctatgtattcaacaatgatgagagactcacaaattggtttatctttgtgaataagcactgggactttgccataaacagggttggattgaagaag |
214 |
Q |
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| T |
25867517 |
tttcatctatatattcaacaatgatgagagactcagatattggtttatctttgtgaataagcactgggactttgccataaacagggttggattgaagaag |
25867616 |
T |
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| Q |
215 |
aatatcacttttggggttaaaggtttcattctcttcaaagttttcatattcaagggatttgatgttaagggcaatcttcacccttgtcacataaggactt |
314 |
Q |
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| T |
25867617 |
aatatcacttttggggttaaaggtttcattctcttcaaagttttcatattcaagggatttgatgttaagggcaatcttcacccttgtcacataaggactt |
25867716 |
T |
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| Q |
315 |
gaccatttgccaataagcttcacatcactctttgccattgaaat |
358 |
Q |
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| T |
25867717 |
gaccatttgccaataagcttcacatcactctttgccattgaaat |
25867760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 21 - 358
Target Start/End: Original strand, 44348818 - 44349155
Alignment:
| Q |
21 |
gaagctaccttttgatctatataagcagcccagaatctagcaactgctctatcataagtatcagaagggagaatggaaggagcacttgaccaagtttcat |
120 |
Q |
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| T |
44348818 |
gaagctaccttttgatctatataagcagcccagaatcttgcaagtgctctatcataagtatcagaagggagaatagaaggagcactggaccatgtttcat |
44348917 |
T |
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| Q |
121 |
ctatgtattcaacaatgatgagagactcacaaattggtttatctttgtgaataagcactgggactttgccataaacagggttggattgaagaagaatatc |
220 |
Q |
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| T |
44348918 |
ctatatattcaacaatgatgagagactcgcagattggtctatcttggtgaataagcactgggactttgccataaatagggttggattgaagaagaatatc |
44349017 |
T |
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| Q |
221 |
acttttggggttaaaggtttcattctcttcaaagttttcatattcaagggatttgatgttaagggcaatcttcacccttgtcacataaggacttgaccat |
320 |
Q |
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| T |
44349018 |
acttttggggttaaaggtttcattctcttcaaagttttcatattcaagggatttgatgttaagggcaatcttcacccttgtcacataaggacttgaccat |
44349117 |
T |
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| Q |
321 |
ttgccaataagcttcacatcactctttgccattgaaat |
358 |
Q |
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| T |
44349118 |
ttgccaataagcttcacatcactcattgccattgaaat |
44349155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 40338309 - 40338373
Alignment:
| Q |
117 |
tcatctatgtattcaacaatgatgagagactcacaaattggtttatctttgtgaataagcactgg |
181 |
Q |
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||||| ||||||||||||||||| | ||||||||| |||||||| || | |||||| |||||||| |
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| T |
40338309 |
tcatcaatgtattcaacaatgatcatagactcacatattggtttttcatcgtgaatcagcactgg |
40338373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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