View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12168_high_5 (Length: 228)

Name: NF12168_high_5
Description: NF12168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12168_high_5
NF12168_high_5
[»] chr7 (3 HSPs)
chr7 (7-184)||(44871827-44872004)
chr7 (19-122)||(44872090-44872193)
chr7 (16-165)||(44871978-44872130)
[»] chr3 (8 HSPs)
chr3 (7-165)||(47527749-47527907)
chr3 (7-162)||(47527881-47528036)
chr3 (51-135)||(47527661-47527745)
chr3 (20-123)||(47527426-47527529)
chr3 (16-179)||(47522227-47522390)
chr3 (18-159)||(47522163-47522304)
chr3 (7-112)||(47522284-47522389)
chr3 (58-109)||(47527599-47527650)
[»] chr2 (1 HSPs)
chr2 (182-228)||(120193-120239)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 7 - 184
Target Start/End: Complemental strand, 44872004 - 44871827
Alignment:
Q  7 gaaagtgcaaccgagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagcgactgaaagaatccgaggaagaagca 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  44872004 gaaagtgcaaccgagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagagactgaaagaatccaaggaagaagca 44871905  T
Q  107 gcagcatcaatttattcttctcaattacatttcaaagagcaacccagagaatctgaggaggaagcagaagcaatagca 184  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44871904 gcagcatcaatttattcttctcaattacatttgaaagagcaacccagagaatctgaggaggaagcagaagcaatagca 44871827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 44872193 - 44872090
Alignment:
Q  19 gagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagcgactgaaagaatccgaggaagaagcagcagcatcaatt 118  Q
    |||| ||||| ||||||||||||| ||||||||| |||||||| ||||||||||||| ||||||| |  |||||||||||||  ||||||| ||||||||    
T  44872193 gagaaaatccaaggaagcagtagcaagagcatttactttgtctgcattacagtcgaaggagcgaccgggagaatccgaggaaacagcagcaacatcaatt 44872094  T
Q  119 tatt 122  Q
    ||||    
T  44872093 tatt 44872090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 44872130 - 44871978
Alignment:
Q  16 accgagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagcgactgaaagaatccgaggaagaag---cagcagca 112  Q
    |||| |||||||||||||| ||| ||| | | || ||| |||| |||| |||||||||||||||| ||||| | |||||||||||| ||   || || ||    
T  44872130 accgggagaatccgaggaaacagcagcaacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaacaaca 44872031  T
Q  113 tcaatttattcttctcaattacatttcaaagagcaacccagagaatctgagga 165  Q
     |||||| |||||||| |||||| || |||| |||||| |||||||| |||||    
T  44872030 gcaatttcttcttctccattacagttgaaagtgcaaccgagagaatccgagga 44871978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 165
Target Start/End: Original strand, 47527749 - 47527907
Alignment:
Q  7 gaaagtgcaaccgagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagcgactgaaagaatccgaggaagaagca 106  Q
    ||||||||||||||  |||||||||| | ||||||| |||| |||||||||||||||||| |||||||  |||||||||| || ||| || |||| ||||    
T  47527749 gaaagtgcaaccgaaggaatccgaggtatcagtagcaagaggattttctttgtctccatttcagtcgattgagcgactgagagcatctgatgaagcagca 47527848  T
Q  107 gcagcatcaatttattcttctcaattacatttcaaagagcaacccagagaatctgagga 165  Q
    ||| || |||||| ||| |||| |||||| || ||||||||||| ||||||||||||||    
T  47527849 gcaacaacaatttcttcgtctccattacagttgaaagagcaaccgagagaatctgagga 47527907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 47527881 - 47528036
Alignment:
Q  7 gaaagtgcaaccgagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagcgactgaaagaatccgaggaagaagca 106  Q
    ||||| ||||||||||||||| ||||||||| |||  ||||||||||  ||||||||||||||||||||||||||||||  ||||| |||||||| ||||    
T  47527881 gaaagagcaaccgagagaatctgaggaagcattagtaagagcattttacttgtctccattacagtcgaaagagcgactgcgagaatgcgaggaagcagca 47527980  T
Q  107 gcagcatcaatttattcttctcaattacatttcaaagagcaacccagagaatctga 162  Q
    ||| ||| ||||||||| | || ||||||  | |||||||||   |||||||||||    
T  47527981 gcaacattaatttattcgtttccattacagataaaagagcaatggagagaatctga 47528036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 47527661 - 47527745
Alignment:
Q  51 tttctttgtctccattacagtcgaaagagcgactgaaagaatccgaggaagaagcagcagcatcaatttattcttctcaattaca 135  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||  |||||| ||||| |||| ||||||    
T  47527661 tttctttgtctccattacagtcgaaagagcgactgagagaatctgaggaagcagcagcaatatcaatatattcatctccattaca 47527745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 47527426 - 47527529
Alignment:
Q  20 agagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagcgactgaaagaatccgaggaagaagcagcagcatcaattt 119  Q
    ||||||||||||||||| | |||||||||||||||||| |||| | ||||| |||  ||||||| || | |||| ||||||  ||||||| |||||||||    
T  47527426 agagaatccgaggaagctggagctagagcattttctttttctcaactacagccgacggagcgacagagaaaatctgaggaaacagcagcaacatcaattt 47527525  T
Q  120 attc 123  Q
    ||||    
T  47527526 attc 47527529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 47522227 - 47522390
Alignment:
Q  16 accgagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagcgactgaaagaatccgaggaagaagcagcagcatca 115  Q
    |||||||||||| |||||| ||| ||| | | || ||| || |||||| ||||| |||||||||| || || ||||||| |||||| ||||||| |||||    
T  47522227 accgagagaatctgaggaaacagcagcaatatcaatttattcgtctcctttacaatcgaaagagctaccgagagaatcccaggaagcagcagcaacatca 47522326  T
Q  116 atttattcttctcaattacatttcaaagagcaacccagagaatctgaggaggaagcagaagcaa 179  Q
    || ||||  |||| ||| |  |  |||||| |||  |||||||| ||||||||||||| |||||    
T  47522327 atctattggtctccattgccgtcgaaagagaaactgagagaatccgaggaggaagcagcagcaa 47522390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 47522163 - 47522304
Alignment:
Q  18 cgagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagcgactgaaagaatccgaggaagaagcagcagcatcaat 117  Q
    ||||||||||||||||| ||| ||  | | || ||||| |||||||||| ||||||||| || ||| || |||||| ||||||  |||||||  ||||||    
T  47522163 cgagagaatccgaggaaacagaaggaacaacaatttctctgtctccattgcagtcgaaaaagagaccgagagaatctgaggaaacagcagcaatatcaat 47522262  T
Q  118 ttattcttctcaattacatttcaaagagcaacccagagaatc 159  Q
    |||||| ||||  ||||| |  ||||||| ||| ||||||||    
T  47522263 ttattcgtctcctttacaatcgaaagagctaccgagagaatc 47522304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 47522284 - 47522389
Alignment:
Q  7 gaaagtgcaaccgagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagcgactgaaagaatccgaggaagaagca 106  Q
    ||||| || ||||||||||||| ||||||||| ||| | | || | | || ||||||||| | ||||||||||  ||||| |||||||||||| ||||||    
T  47522284 gaaagagctaccgagagaatcccaggaagcagcagcaacatcaatctattggtctccattgccgtcgaaagagaaactgagagaatccgaggaggaagca 47522383  T
Q  107 gcagca 112  Q
    ||||||    
T  47522384 gcagca 47522389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 47527599 - 47527650
Alignment:
Q  58 gtctccattacagtcgaaagagcgactgaaagaatccgaggaagaagcagca 109  Q
    |||||||||||||||||| |||| ||||| |||||||| ||||| |||||||    
T  47527599 gtctccattacagtcgaatgagcaactgagagaatccgtggaagcagcagca 47527650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 120193 - 120239
Alignment:
Q  182 gcatgttttcatggagtacatgaccgggggtagtttggctgacgtgt 228  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  120193 gcatgttttcatggagtacatgtccgggggtagtttggctgacgtgt 120239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University