View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12168_high_8 (Length: 210)
Name: NF12168_high_8
Description: NF12168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12168_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-100; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 11116069 - 11116252
Alignment:
| Q |
17 |
atgtttggcattgttatttttcccagtgactcgtggatcaaccgtgctaccaatatttggcctcacttctgaaggttgcatcaaataccacatttggctt |
116 |
Q |
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| T |
11116069 |
atgtttggcattgttatttttcccagtgactcgtggatcaaccgtgctaccaatatttggcctcacttctgaaggttgcatcaaataccacatttggctt |
11116168 |
T |
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| Q |
117 |
gggcacgtgcttatgacacttttcactactcatggagtttgttacattatctattgggcatctactcatcaaatttcacaggtt |
200 |
Q |
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| T |
11116169 |
gggcacgtgcttatgacacttttcactactcatggagtttgttacattatctattgggcatctactcatcaaatttcacaggtt |
11116252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 11104402 - 11104585
Alignment:
| Q |
17 |
atgtttggcattgttatttttcccagtgactcgtggatcaaccgtgctaccaatatttggcctcacttctgaaggttgcatcaaataccacatttggctt |
116 |
Q |
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| T |
11104402 |
atgtttggcattcttgtttttcccggtgacacgtggatcatctgtcctaccaatatttggcctcacttctgaaggttgcatcaaatatcatatttggctt |
11104501 |
T |
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| Q |
117 |
gggcacgtgcttatgacacttttcactactcatggagtttgttacattatctattgggcatctactcatcaaatttcacaggtt |
200 |
Q |
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| T |
11104502 |
ggacacatacttatggcaattttcacaactcatggaatttgttacatcacctattgggcatctactaataaaatgtcagaggtt |
11104585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 11591092 - 11591148
Alignment:
| Q |
144 |
actcatggagtttgttacattatctattgggcatctactcatcaaatttcacaggtt |
200 |
Q |
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| T |
11591092 |
actcatggaatttgttacatcatccattgggcatctactaatcaaatgtcagaggtt |
11591148 |
T |
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