View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12168_low_3 (Length: 313)
Name: NF12168_low_3
Description: NF12168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12168_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 13 - 294
Target Start/End: Complemental strand, 21240888 - 21240607
Alignment:
| Q |
13 |
cacagattgaaagaacaataatgagaattagggcaattatgatacccagaacaattagctttatcttcatattttggaaccacatctttctcctaagctt |
112 |
Q |
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| T |
21240888 |
cacagattgaaagaacaataatgagaattagggcaattatgatacccagaacaattagctttatcttcatattttggaaccacatctttctcctaagctt |
21240789 |
T |
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| Q |
113 |
ggttccatgttgcctgaaatcttgtgcctgcaaaatcatatatgaattgagagtcacaaaaatgatagccaacaatttgaaattttttcaaaaaagtcaa |
212 |
Q |
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| T |
21240788 |
ggttccatgttgcctgaaatcttgtgcctgcaaaatcatatatgaattgaaagtcacaaaaatgatagccaacaatttgaaattttttcaaaaaagtcaa |
21240689 |
T |
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| Q |
213 |
ctctgattaaagagacatcaatctttcgaggtacaatgtgaaccaaattcagtgtttgaaagtaaagaaacgaagaaaaaca |
294 |
Q |
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| T |
21240688 |
ctttgattaaagagacatcaatctttcgaggtacaatgtgaaccaaattcagtgtttgaaagtaaagaaacgaagaaaaaca |
21240607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 21216061 - 21215978
Alignment:
| Q |
23 |
aagaacaataatgagaattagggcaattatgatacccagaacaattagctttatcttcatattttggaaccacatctttctcct |
106 |
Q |
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| T |
21216061 |
aagaacaattatgagaataatgacaattatgatagcaagaactattagttttatcttcatgttctgaaaccacatctttctcct |
21215978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 7525084 - 7525209
Alignment:
| Q |
21 |
gaaagaacaataatgagaattagggcaattatgatacccagaacaattagctttatcttcatattttggaaccacatctttctcctaagcttggttccat |
120 |
Q |
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| T |
7525084 |
gaaagaacaataatgagaatcaatgcaattatgatagcaagaactatgagctttatcttcatgttttgataccacatctttcttctcaactgggttccct |
7525183 |
T |
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| Q |
121 |
gttgcctgaaatcttgtgcctgcaaa |
146 |
Q |
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| T |
7525184 |
gctgcctgaaatcttgtgcctgcaaa |
7525209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 7532952 - 7533077
Alignment:
| Q |
21 |
gaaagaacaataatgagaattagggcaattatgatacccagaacaattagctttatcttcatattttggaaccacatctttctcctaagcttggttccat |
120 |
Q |
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| T |
7532952 |
gaaagaacaataatgagaatcaatgcaattatgatagcaagaactatgagctttatcttcatgttttgataccacatctttcttctcaactgggttccct |
7533051 |
T |
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| Q |
121 |
gttgcctgaaatcttgtgcctgcaaa |
146 |
Q |
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| T |
7533052 |
gctgcctgaaatcttgtgcctgcaaa |
7533077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 7498871 - 7498994
Alignment:
| Q |
21 |
gaaagaacaataatgagaattagggcaattatgatacccagaacaattagctttatcttcatattttggaaccacatctttctcctaagcttggttccat |
120 |
Q |
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| T |
7498871 |
gaaagaacaataatgaaaatcaatgcaattatgatagcaagaactatgagcttgatcttcatgttttgataccacatctttctcctcaattgggttccct |
7498970 |
T |
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| Q |
121 |
gttgcctgaaatcttgtgcctgca |
144 |
Q |
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| T |
7498971 |
gctgcctgaaatcttgtgcctgca |
7498994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 7486557 - 7486624
Alignment:
| Q |
21 |
gaaagaacaataatgagaattagggcaattatgatacccagaacaattagctttatcttcatattttg |
88 |
Q |
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| T |
7486557 |
gaaagaacaataatgagaatcaatgcaattatgatagcaagaactatgagcttgatcttcatgttttg |
7486624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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