View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12168_low_4 (Length: 300)
Name: NF12168_low_4
Description: NF12168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12168_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 25 - 293
Target Start/End: Original strand, 28929979 - 28930253
Alignment:
| Q |
25 |
aatgtaactttgaaggttgagtattttgatttatgaatggttaattctatgaagcacatacattcttgggtttagtcgcatcaacgaaccatggtgtcaa |
124 |
Q |
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| T |
28929979 |
aatgtaactttgaaggttgagtattttgatttatgaatggttaattctatgaagcacatacattcttgggtttagtcgcatcaacgaaccatggtgtcaa |
28930078 |
T |
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| Q |
125 |
tcacggatttcagaaaatagtggtatgttcaaattaatcacctcagtgaacctccctgttcaaatactg---nnnnnnnnnaac---cttggcgctctat |
218 |
Q |
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| T |
28930079 |
tcacggatttcagaaaatagtgttatgttcaaattaatcacctcagtgaacctccctgttcaaatactgttttttttttttaaccttcttggcgctctat |
28930178 |
T |
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| Q |
219 |
cagttaaaaggtgatggtatttctgtcaggttggaatgaattgttttctggttttgctgcaatcggtctgtgctg |
293 |
Q |
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| T |
28930179 |
cagttaaaaggtgatggtatttctgtcaggttggaatgaattgttttctggttttgctgcaatcgttctgtgctg |
28930253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 10185559 - 10185616
Alignment:
| Q |
43 |
gagtattttgatttatgaatggttaattctatgaagcacatacattcttgggtttagt |
100 |
Q |
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| T |
10185559 |
gagtattttaatttatgaatgtaaaattctatgaagcacatacactcttgggtttagt |
10185616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 35123652 - 35123588
Alignment:
| Q |
26 |
atgtaactttgaaggttgagtattttgatttatgaatggttaattctatgaagcacatacattct |
90 |
Q |
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| T |
35123652 |
atgtaactttgaagatagagtattttaatttatttatgtaaaattttatgaagcacatacattct |
35123588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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