View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12168_low_7 (Length: 220)
Name: NF12168_low_7
Description: NF12168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12168_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 27753463 - 27753650
Alignment:
| Q |
19 |
gtctcggttggcaaaaaactaggagctgattcaactcccaatgcctctgcaccactaagccacatcgtctcactcacaaaccacatgtgagagggcttct |
118 |
Q |
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| T |
27753463 |
gtctcggttagcaaaaaatcaagagctgattcagctcccaatgcctctgcaccactaagccacatcgtctcactcacaaaccacatgcgagagggcttct |
27753562 |
T |
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| Q |
119 |
gcttacgagttttagacatacggttcttagtcacatgccaatccatgtgacttctgtactcgtcttgggatttgaatcggaggccaca |
206 |
Q |
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| T |
27753563 |
gcttacggtttttagacatacggttcttagtcacatgccaatccatgtgacttctgtgctcatcttgggatttgaatcggaggccaca |
27753650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 3251618 - 3251431
Alignment:
| Q |
19 |
gtctcggttggcaaaaaactaggagctgattcaactcccaatgcctctgcaccactaagccacatcgtctcactcacaaaccacatgtgagagggcttct |
118 |
Q |
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||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
3251618 |
gtctcggttggcaaaaaacctggagctgattcagttcccaatgcctctgcaccactaagccacatcgtctcactcacaaaccatttacgagagggcttct |
3251519 |
T |
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| Q |
119 |
gcttacgagttttagacatacggttcttagtcacatgccaatccatgtgacttctgtactcgtcttgggatttgaatcggaggccaca |
206 |
Q |
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| T |
3251518 |
gcttacggtttttagacatacggttcttagtcacatgccaatccatgtgactgctgtgctcgtcttgggatttgaatcggaggccaca |
3251431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 3263021 - 3262834
Alignment:
| Q |
19 |
gtctcggttggcaaaaaactaggagctgattcaactcccaatgcctctgcaccactaagccacatcgtctcactcacaaaccacatgtgagagggcttct |
118 |
Q |
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||||||||||||||||||| ||||| || | ||||||||||| ||||||||| ||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
3263021 |
gtctcggttggcaaaaaacctggagcagacttaactcccaatgtctctgcacctttaagccacatcatctcactcacaaaccacatacgagagggcttct |
3262922 |
T |
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| Q |
119 |
gcttacgagttttagacatacggttcttagtcacatgccaatccatgtgacttctgtactcgtcttgggatttgaatcggaggccaca |
206 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||| |||||||| |||||||||||| |
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| T |
3262921 |
gcttacagtttttagacatacggttcttagtcacatgccaatccatgtgactgctgtgctcatctttggatttgagtcggaggccaca |
3262834 |
T |
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