View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12169_low_1 (Length: 1046)
Name: NF12169_low_1
Description: NF12169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12169_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 797; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 797; E-Value: 0
Query Start/End: Original strand, 221 - 1025
Target Start/End: Original strand, 36998286 - 36999090
Alignment:
| Q |
221 |
agcgagtataatttatgtataattattaaactctcctaattttttatttattcaagcaaagtgaaattacaactccatgtgagcatgtcacagaatgtcc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36998286 |
agcgagtataatttatgtataattattaaactctcctaattttttatttattcaagcaaagtgaaattacaactccatgtgagcatgtcacagaatgtcc |
36998385 |
T |
|
| Q |
321 |
cacgtacataaataaattggaacatccacaagctcagaccaaaaaagaaaaggaaatgaaacaaacataaattaaacctcttaagacagacaatgactta |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36998386 |
cacgtacataaataaattggaacatccacaagctcagaccaaaaaagaaaaggaaatgaaacaaacataaattaaacctcttaagacagacaatgactta |
36998485 |
T |
|
| Q |
421 |
agaggaaaacaaacatacgaccacataaactaaaccttattttgtgtgtaatgaagcagttagctatcattgtattcatttataagtaccaccagtggta |
520 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36998486 |
agaggaaaacaaacatacaaccacataaactaaaccttattttgtgtgtaatgaagcagttagctatcattgtattcatttataagtaccaccagtggtg |
36998585 |
T |
|
| Q |
521 |
taccctgtggcatttggatttccaccaacacgggtattatgggccgtggcggtcccatctgtgcctctattagtcccaatagggtgtgagcccaccacac |
620 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36998586 |
taccctgtggcatttggatttccaccaacacgggtattatgggccgtggcggtcccatctgtgcctctattagtcccaatagggtgtgagcccaccacac |
36998685 |
T |
|
| Q |
621 |
cgtcgacgacatggcccgtgggctgtccagttccatgaccaggcatggctgacatctgatgtgccccagtgggatgtccataattcccagtggtagagta |
720 |
Q |
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| T |
36998686 |
cgtcgacgacatggcccgtgggctgtccagttccatgaccaggcatggctgacatctgatgtgccccagtgggatgtccataattcccagtggtagagta |
36998785 |
T |
|
| Q |
721 |
tgtggcggtccccgttccagtcgtccctgtggtgtggtggggctgacccatatgcccagccgcagcagtggtcgtctgtttgaccgccgcattgtgttca |
820 |
Q |
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| T |
36998786 |
tgtggcggtccccgttccagtcgtccctgtggtgtggtggggctgacccatatgcccagccgcagcagtggtcgtctgtttgaccgccgcattgtgttca |
36998885 |
T |
|
| Q |
821 |
cgtgctgccagcttatctagctctgcctggttcatctttgcctctttcttatgggttgccatctctttttgcacaggatcacgtgctgtcatcttctcag |
920 |
Q |
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| T |
36998886 |
cgtgctgccagcttatctagctctgcctggttcatctttgcctctttcttatgggttgccatctctttttgcacaggatcacgtgctgtcatcttctcag |
36998985 |
T |
|
| Q |
921 |
tctggagataaattagttcaacacatgttaggaacaaacaacacaaatgtgacccataactagcacattgaaagaagaaaaaagagttcttcaaaagtat |
1020 |
Q |
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| T |
36998986 |
tctggagataaattagttcaacacatgttaggaacaaacaacacaaatgtgacccataactagcacattgaaagaagaaaaaagagttcttcaaaagtat |
36999085 |
T |
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| Q |
1021 |
actat |
1025 |
Q |
| |
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||||| |
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| T |
36999086 |
actat |
36999090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 36998050 - 36998251
Alignment:
| Q |
13 |
agaacctgtgagcattataaggttgtaaaatctaacattaatatatggctgttttcaggtaaggctttgaaggacttaatgtgaaaagctgctaaggcaa |
112 |
Q |
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|||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
36998050 |
agaaactgtgagcataataaggttgtaaaatctaaca---atatatggctgttttcaggtaaggctttgaaggatttaatgtggaaagctgctaaggcaa |
36998146 |
T |
|
| Q |
113 |
acctcatcagttttgaatgtttctttggaagaaggctatgtcgaaaccattagttctatttaattccttnnnnnnncattgttctatttaattaaaaata |
212 |
Q |
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| T |
36998147 |
acctcatcagtttttaacgtttctttggaagaaggctatgtcgaaaccattagttctatttaattccttaaaaaaacattgttctatttaattaaaaata |
36998246 |
T |
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| Q |
213 |
gaaaa |
217 |
Q |
| |
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|||| |
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| T |
36998247 |
caaaa |
36998251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 812 - 924
Target Start/End: Original strand, 36994070 - 36994182
Alignment:
| Q |
812 |
ttgtgttcacgtgctgccagcttatctagctctgcctggttcatctttgcctctttcttatgggttgccatctctttttgcacaggatcacgtgctgtca |
911 |
Q |
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||||||||||| || ||| ||||| ||||| |||||||| | | || | |||||||| |||||||||||||||||||||| ||||||| |||| |||| |
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| T |
36994070 |
ttgtgttcacgcgccgcctctttatcaagctcagcctggttaaccctttcttctttcttttgggttgccatctctttttgcaaaggatcatgtgccgtca |
36994169 |
T |
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| Q |
912 |
tcttctcagtctg |
924 |
Q |
| |
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||||||| ||||| |
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| T |
36994170 |
tcttctctgtctg |
36994182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 863 - 924
Target Start/End: Original strand, 36988346 - 36988407
Alignment:
| Q |
863 |
tctttcttatgggttgccatctctttttgcacaggatcacgtgctgtcatcttctcagtctg |
924 |
Q |
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|||||||| |||||||||||||| ||||||| ||||||| |||| ||||||||||| ||||| |
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| T |
36988346 |
tctttcttttgggttgccatctccttttgcaaaggatcatgtgccgtcatcttctctgtctg |
36988407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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