View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12169_low_12 (Length: 239)
Name: NF12169_low_12
Description: NF12169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12169_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 54792497 - 54792720
Alignment:
| Q |
1 |
cgttataaagatttgtagtttcatatgatctatgaaatattagtgcgcattttt-catttgaaaaatcatcctcnnnnnnnggattaaaaaatcatcttt |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
54792497 |
cgttataaagatttgtagtttcatatgatctatgaaatattagtgcgcattttttcatttgaaaaatcatcctctttttttggattaaaaaatcatcttt |
54792596 |
T |
|
| Q |
100 |
caaaatccataaaaaaccacatctgcccgatgtgtttctttcatcccactctctaatctctacttgcttgatgtgcctcaagactttaaaatcatcagca |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54792597 |
caaaatccataaaaaaccacatctgcccgatgtgtttctttcatcccactttctaatctctacttgcttgatgtgcctcaagactttaaaatcatcagca |
54792696 |
T |
|
| Q |
200 |
tgtatgtgtacttcctcaagattc |
223 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
54792697 |
tgtatgtgtacttcctcaagattc |
54792720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 54776628 - 54776403
Alignment:
| Q |
2 |
gttataaagatttgtagtttcatatgatctatgaaatattagtgcgcattttt-catttgaaaaatcatcctcnnnnnnn--ggattaaaaaatcatctt |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||| |||||||||| ||||||| |
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| T |
54776628 |
gttataaagatttgtagtttcatatgatctatgaaatattagtgtgcattttttcatttgaaaaataatcctttatttttttggattaaaaattcatctt |
54776529 |
T |
|
| Q |
99 |
tcaaaatccataaaaaaccacatctgcccgatgtgttt-ctttcatcccactctctaatctctacttgcttgatgtgcctcaagactttaaaatcatcag |
197 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||| | | || |
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|
| T |
54776528 |
tcaaaatccataaaaaaccacatctgcctgatgtgttttctttcatcccactttctaatctctacttgcttgatgtgcctcaagacttaaaattttttag |
54776429 |
T |
|
| Q |
198 |
catgtatgtgtacttcctcaagattc |
223 |
Q |
| |
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|||||||||||||||||||||||||| |
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|
| T |
54776428 |
catgtatgtgtacttcctcaagattc |
54776403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 52285166 - 52285391
Alignment:
| Q |
3 |
ttataaagatttgtagtttcatatgatctatgaaatattagt--gcgcatttttcatttgaaaaatcatcctcnnnnnnn--ggattaaaaaatcatctt |
98 |
Q |
| |
|
||||||||||||| ||||||||||| | |||||||||||||| ||| ||| ||||||||||||||||| | ||||| |||| | ||||| |
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| T |
52285166 |
ttataaagatttgcagtttcatatggtatatgaaatattagtaagcgattttgtcatttgaaaaatcatcttttttttttttggattgaaaattaatctt |
52285265 |
T |
|
| Q |
99 |
tcaaaatccataaaaaaccacatctgcccgatgtg-tttctttcatcccactctctaatctctacttgcttgatgtgcctcaagactttaaaatcatcag |
197 |
Q |
| |
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| ||||||||||||||||||||||| | |||||| ||||| |||||||||| |||||||| |||||| ||||||||||| ||||||||||||||||||| |
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|
| T |
52285266 |
ttaaaatccataaaaaaccacatctcctagatgtgctttctgtcatcccactttctaatctttacttgtttgatgtgccttaagactttaaaatcatcag |
52285365 |
T |
|
| Q |
198 |
catgtatgtgtacttcctcaagattc |
223 |
Q |
| |
|
| | |||||| ||||| |||||||| |
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|
| T |
52285366 |
ccttcatgtgtgcttccacaagattc |
52285391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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