View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12169_low_13 (Length: 209)
Name: NF12169_low_13
Description: NF12169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12169_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 25698951 - 25698781
Alignment:
| Q |
21 |
cctgatacatccaaccaacaggtttaagatcagaaataagggagtttatcatcttgtatgatgaatatgtgtgaccacgcttatatttggccctcgcaac |
120 |
Q |
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| T |
25698951 |
cctgatacatccaaccaacaggtttaagatcagaaataagggagtttatcatcttgtatgatgaatatgtgtgaccacgcttatatttggccctcgcaac |
25698852 |
T |
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| Q |
121 |
acccactgaagaataaatatgtccttccttaagagcagcctcaaaccaattttgtgcatctttgtattctt |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25698851 |
acccactgaagaataaatatgtccttccttaagagcagcctcaaaccaattttgtgcatctttgtattctt |
25698781 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 4181574 - 4181744
Alignment:
| Q |
21 |
cctgatacatccaaccaacaggtttaagatcagaaataagggagtttatcatcttgtatgatgaatatgtgtgaccacgcttatatttggccctcgcaac |
120 |
Q |
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||||||||||||| |||||||||||| | ||| ||| || ||||| || ||||| |||| | |||||| ||||| || ||||||||||||| ||||| |
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| T |
4181574 |
cctgatacatccatccaacaggtttatggtcattaattagcgagttcataatcttatatgccgcatatgtatgaccgcgtctatatttggcccttgcaac |
4181673 |
T |
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| Q |
121 |
acccactgaagaataaatatgtccttccttaagagcagcctcaaaccaattttgtgcatctttgtattctt |
191 |
Q |
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| T |
4181674 |
tccgactaacgaataaacatgccctgcctccacggctacctcaaaccaatgttgtgcatctttgtattctt |
4181744 |
T |
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