View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12169_low_2 (Length: 450)
Name: NF12169_low_2
Description: NF12169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12169_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 14 - 436
Target Start/End: Original strand, 41236469 - 41236890
Alignment:
| Q |
14 |
ctgtgttaaaaatcttctgtgattttactcgagttcactgcgattaaactcgacttcatggaattgaaattgatactcagactcaaagtttagttcactg |
113 |
Q |
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| T |
41236469 |
ctgtgttaaaaatcttctgtgactttactcgagttcactgcgattaaactcgacttcatggaattgaaattgatacttagactcaaagtttagttcactg |
41236568 |
T |
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| Q |
114 |
cgtgtttaccaaagtttactaaaatttgagtttacagttagatcaacttgaaatagatcattagactcatggaatcgtagttaatttgtggttttaacaa |
213 |
Q |
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| T |
41236569 |
catgtttaccaaagtttactaaaatttgagtt-acagttagatcaacttgaaatagatcattagactcatggaatcgtagttaatttgtggttttaacaa |
41236667 |
T |
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| Q |
214 |
ttattcgtgtgtatctgtgttatgtgaatatgaaacataaattcaagttttatagcactagtgacaagaaattatcctaaatgtttgcatacccttttgc |
313 |
Q |
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| T |
41236668 |
ttattcgtgtgtatccgtgttatgtgaatatgaaacataaattcaagttttatagcactagtgacaagaaattatcctaaatgtttgcatacccttttgc |
41236767 |
T |
|
| Q |
314 |
tttcatccatgtcaactttgttgccaaccagtattttgttgacaatattgtctgaagaatgttgctcaatgctacgaatccaattcgtgatatctgaaat |
413 |
Q |
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| T |
41236768 |
tttcatccatgtcaactttgttgccaaccagtattttgttgacaatattgtctgaagaatgttgctcaatgctacgaatccaattcgtgatatctgaaat |
41236867 |
T |
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| Q |
414 |
tagcatatggttggtgaatattg |
436 |
Q |
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| T |
41236868 |
tagcatatggttggtgaatattg |
41236890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 301 - 409
Target Start/End: Complemental strand, 40197382 - 40197277
Alignment:
| Q |
301 |
catacccttttgctttcatccatgtcaactttgttgccaaccagtattttgttgacaatattgtctgaagaatgttgctcaatgctacgaatccaattcg |
400 |
Q |
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| T |
40197382 |
catacccgtttgctttcatccatgtcagctttgttgcccaccaatatcttgtt---aacattgtcagaagcatgctgctcaatgttacgaatccaattcc |
40197286 |
T |
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| Q |
401 |
tgatatctg |
409 |
Q |
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| T |
40197285 |
tgatatctg |
40197277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 296 - 409
Target Start/End: Original strand, 23384951 - 23385061
Alignment:
| Q |
296 |
gtttgcatacccttttgctttcatccatgtcaactttgttgccaaccagtattttgttgacaatattgtctgaagaatgttgctcaatgctacgaatcca |
395 |
Q |
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|||||||||||||||||||||| ||||| || ||||||| || |||||||||||||| || ||| || |||| ||||||||||||| | |||||||| |
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| T |
23384951 |
gtttgcatacccttttgctttcgtccatatctgctttgttccctaccagtattttgtt---aacattatccgaagcatgttgctcaatgttgcgaatcca |
23385047 |
T |
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| Q |
396 |
attcgtgatatctg |
409 |
Q |
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|||| ||||||||| |
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| T |
23385048 |
attcctgatatctg |
23385061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 409
Target Start/End: Original strand, 29346430 - 29346532
Alignment:
| Q |
304 |
acccttttgctttcatccatgtcaactttgttgccaaccagtattttgttgacaatattgtctgaagaatgttgctcaatgctacgaatccaattcgtga |
403 |
Q |
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|||||||||||||||||||||||| | ||||| || || | |||||||||||| |||||| |||| ||| ||||||||| | |||||||||||| ||| |
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| T |
29346430 |
acccttttgctttcatccatgtcagccttgttccccactaatattttgttgac---attgtcagaagcatgctgctcaatgttgcgaatccaattcttga |
29346526 |
T |
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| Q |
404 |
tatctg |
409 |
Q |
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| |||| |
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| T |
29346527 |
tgtctg |
29346532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 350
Target Start/End: Complemental strand, 20686929 - 20686875
Alignment:
| Q |
296 |
gtttgcatacccttttgctttcatccatgtcaactttgttgccaaccagtatttt |
350 |
Q |
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|||||||||| |||| | |||||||||| ||||||||||| |||||||||||||| |
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| T |
20686929 |
gtttgcatacactttagatttcatccatatcaactttgtttccaaccagtatttt |
20686875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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