View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12169_low_4 (Length: 436)
Name: NF12169_low_4
Description: NF12169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12169_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 421
Target Start/End: Complemental strand, 41128443 - 41128041
Alignment:
| Q |
19 |
taatgacttgtggatcaaaaatcttcaacactgggaaatgatcagcaatatttggtgttccaacagcacttaatagagtagacactatatttttatattc |
118 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41128443 |
taatgccttgtggatcaaaaatcttcaacactgggaaatgatcagcaatatttggtgttccaacagcacttaatagagtagacactatatttttatattc |
41128344 |
T |
|
| Q |
119 |
atcatctaaattctcaacaaaatcttgagacacaaaagtatatgacaaaaaattaatgcaagccttgaaagcagctcttccaacatcaacagcttcaccg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41128343 |
atcatctaaattctcaacaaaatcttgagacacaaaagtatatgacaaaaaattaatgcaagccttgaaagcagctcttccaacatcaacagcttcacca |
41128244 |
T |
|
| Q |
219 |
gttaagctgcttttatgcatatcatttagaagatcttttaatttcatacgtctaagctcttgacttccatcaagagttttggtagagaataaattattat |
318 |
Q |
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|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
41128243 |
gttatgctgcttttatgcatatcatttagaagatcttttaatttcatacgtctaagatcttgacttccatcaagagtcttggtagaaaataaattattat |
41128144 |
T |
|
| Q |
319 |
gacatattttcctaagatgttgccaaagaggtgaaaatgggaggaaaactaagctaaaattgttgtgattgtgcgttgttgtgttatcaggaacagatct |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
41128143 |
gacatattttcctaagatgttgccaaagaggtgaaaatgggaggaaaactaagctaaaattgttgtgattatgagttgttgtgttatcaggaacagatct |
41128044 |
T |
|
| Q |
419 |
atc |
421 |
Q |
| |
|
||| |
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|
| T |
41128043 |
atc |
41128041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 421
Target Start/End: Original strand, 41144238 - 41144640
Alignment:
| Q |
19 |
taatgacttgtggatcaaaaatcttcaacactgggaaatgatcagcaatatttggtgttccaacagcacttaatagagtagacactatatttttatattc |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41144238 |
taatgccttgtggatcaaaaatcttcaacactgggaaatgatcagcaatatttggtgttccaacagcacttaatagagtagacactatatttttatattc |
41144337 |
T |
|
| Q |
119 |
atcatctaaattctcaacaaaatcttgagacacaaaagtatatgacaaaaaattaatgcaagccttgaaagcagctcttccaacatcaacagcttcaccg |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41144338 |
atcatctaaattctcaacaaaatcttgagacacaaaagtatatgacaaaaaattaatgcaagccttgaaagcagctcttccaacatcaacagcttcacca |
41144437 |
T |
|
| Q |
219 |
gttaagctgcttttatgcatatcatttagaagatcttttaatttcatacgtctaagctcttgacttccatcaagagttttggtagagaataaattattat |
318 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
41144438 |
gttatgctgcttttatgcatatcatttagaagatcttttaatttctttcgtctaagttcttgacttccatcaagagtcttggtagataataaattattat |
41144537 |
T |
|
| Q |
319 |
gacatattttcctaagatgttgccaaagaggtgaaaatgggaggaaaactaagctaaaattgttgtgattgtgcgttgttgtgttatcaggaacagatct |
418 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
41144538 |
gacatattttcctaagatgttgccaaagaggtgaaaatgggaggaaaactaagctaaaattgttgtgattttgagttgttgtgttatcaggaacagatct |
41144637 |
T |
|
| Q |
419 |
atc |
421 |
Q |
| |
|
||| |
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|
| T |
41144638 |
atc |
41144640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 14 - 421
Target Start/End: Original strand, 41119817 - 41120224
Alignment:
| Q |
14 |
ccttataatgacttgtggatcaaaaatcttcaacactgggaaatgatcagcaatatttggtgttccaacagcacttaatagagtagacactatattttta |
113 |
Q |
| |
|
|||| ||||| ||||||| |||| ||| ||||| || |||||||||||||| | |||||||||||||| ||| | || | ||| |||| ||||| |||| |
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| T |
41119817 |
ccttctaatgccttgtgggtcaacaattttcaaaacagggaaatgatcagccaaatttggtgttccaatagctttcaagatagtggacaatatatcttta |
41119916 |
T |
|
| Q |
114 |
tattcatcatctaaattctcaacaaaatcttgagacacaaaagtatatgacaaaaaattaatgcaagccttgaaagcagctcttccaacatcaacagctt |
213 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
41119917 |
tattcatcatccaaagattcaacaaaatcttgagacacaaaagtatatgacaaaaaattaatgcaagccttgaaagcagctcttccaatatcaacagctt |
41120016 |
T |
|
| Q |
214 |
caccggttaagctgcttttatgcatatcatttagaagatcttttaatttcatacgtctaagctcttgacttccatcaagagttttggtagagaataaatt |
313 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||| |||||||||| ||| | |||||||||| |
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| T |
41120017 |
caccggttaagctgcttttatgcatatcattgagaaagtcttttaatttcatacgtctaagttcttgacttgcatcaagagtcttgttggagaataaatg |
41120116 |
T |
|
| Q |
314 |
attatgacatattttcctaagatgttgccaaagaggtgaaaatgggaggaaaactaagctaaaattgttgtgattgtgcgttgttgtgttatcaggaaca |
413 |
Q |
| |
|
||||| |||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
41120117 |
gttatggcatatttttctaaggtgttgccagagaggtgaaaatgggaggaagactaagctaaaattgttgtgattatgagttgttgtgttatcaggaaca |
41120216 |
T |
|
| Q |
414 |
gatctatc |
421 |
Q |
| |
|
|||||||| |
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|
| T |
41120217 |
gatctatc |
41120224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 206 - 418
Target Start/End: Complemental strand, 41034195 - 41033981
Alignment:
| Q |
206 |
aacagcttcaccggttaagctgcttttatgcatatc--atttagaagatcttttaatttcatacgtctaagctcttgacttccatcaagagttttggtag |
303 |
Q |
| |
|
|||||||| ||| ||||| || |||||||||||||| ||| ||||||||||| ||||||||||||||||| ||||||||| |||||||| | ||| | | |
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| T |
41034195 |
aacagctttaccagttaaactacttttatgcatatctcattgagaagatctttcaatttcatacgtctaagttcttgacttgcatcaagattcttgtttg |
41034096 |
T |
|
| Q |
304 |
agaataaattattatgacatattttcctaagatgttgccaaagaggtgaaaatgggaggaaaactaagctaaaattgttgtgattgtgcgttgttgtgtt |
403 |
Q |
| |
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|||||| || || ||| || |||| ||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| | |
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| T |
41034095 |
agaatagatgataatggcacgtttttctaaggtgttgcaaaagaggtgaaaatgggaggaaaactatgctaaaattgttgtgatcatgagttgttgtgat |
41033996 |
T |
|
| Q |
404 |
atcaggaacagatct |
418 |
Q |
| |
|
||||||||||||||| |
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|
| T |
41033995 |
atcaggaacagatct |
41033981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 31130054 - 31129974
Alignment:
| Q |
152 |
aaaagtatatgacaaaaaatt-aatgcaagccttgaaagcagctcttccaacatcaacagcttcaccggttaagctgctttt |
232 |
Q |
| |
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|||||| | |||||||||||| |||| ||| ||| |||||||||||||| ||||||||||||||||| ||||||||||||| |
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|
| T |
31130054 |
aaaagtgtttgacaaaaaattcaatg-aagtcttaaaagcagctcttcctacatcaacagcttcaccaattaagctgctttt |
31129974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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