View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12169_low_5 (Length: 421)

Name: NF12169_low_5
Description: NF12169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12169_low_5
NF12169_low_5
[»] chr2 (7 HSPs)
chr2 (89-250)||(45082547-45082708)
chr2 (252-400)||(30266314-30266468)
chr2 (252-354)||(25616843-25616945)
chr2 (287-356)||(42847959-42848028)
chr2 (181-250)||(45040589-45040658)
chr2 (297-356)||(45632374-45632433)
chr2 (290-356)||(42848608-42848674)
[»] chr1 (4 HSPs)
chr1 (252-401)||(23732837-23732995)
chr1 (297-356)||(19534730-19534789)
chr1 (252-304)||(14237386-14237438)
chr1 (297-333)||(51097551-51097587)
[»] chr8 (6 HSPs)
chr8 (282-350)||(44495085-44495153)
chr8 (163-250)||(29378191-29378278)
chr8 (252-304)||(9044179-9044231)
chr8 (252-304)||(16723676-16723728)
chr8 (252-304)||(23546138-23546190)
chr8 (252-304)||(23546909-23546961)
[»] chr5 (6 HSPs)
chr5 (269-356)||(4427880-4427967)
chr5 (286-356)||(33573280-33573350)
chr5 (252-304)||(14098489-14098541)
chr5 (287-356)||(14098379-14098448)
chr5 (287-356)||(41609534-41609603)
chr5 (287-356)||(210403-210472)
[»] chr4 (8 HSPs)
chr4 (264-353)||(5941337-5941426)
chr4 (286-356)||(50185305-50185375)
chr4 (287-356)||(49648187-49648256)
chr4 (252-304)||(43428469-43428521)
chr4 (287-356)||(24844112-24844181)
chr4 (297-333)||(11380967-11381003)
chr4 (252-304)||(19638096-19638148)
chr4 (288-356)||(51702695-51702763)
[»] chr3 (10 HSPs)
chr3 (287-356)||(46889353-46889422)
chr3 (252-356)||(20111854-20111958)
chr3 (297-356)||(1093209-1093268)
chr3 (287-356)||(37915435-37915504)
chr3 (287-356)||(49308157-49308226)
chr3 (287-356)||(53467242-53467311)
chr3 (297-352)||(50704311-50704366)
chr3 (297-334)||(36863922-36863959)
chr3 (252-304)||(11617409-11617461)
chr3 (252-304)||(40934833-40934885)
[»] chr7 (9 HSPs)
chr7 (297-356)||(42745671-42745730)
chr7 (286-356)||(42418172-42418242)
chr7 (287-356)||(9146091-9146160)
chr7 (283-356)||(12294226-12294299)
chr7 (287-356)||(32577325-32577394)
chr7 (252-304)||(43448522-43448574)
chr7 (297-334)||(31077732-31077769)
chr7 (284-356)||(12293490-12293562)
chr7 (252-304)||(19068458-19068510)
[»] chr6 (2 HSPs)
chr6 (259-356)||(18970606-18970703)
chr6 (252-304)||(20508604-20508656)
[»] scaffold1370 (1 HSPs)
scaffold1370 (252-310)||(195-253)
[»] scaffold0136 (1 HSPs)
scaffold0136 (287-349)||(23689-23751)
[»] scaffold0159 (1 HSPs)
scaffold0159 (252-304)||(28147-28199)


Alignment Details
Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 89 - 250
Target Start/End: Original strand, 45082547 - 45082708
Alignment:
Q  89 tgattagcaatgactttaatcgaaacttctcaaatcccaggtagtaatttacttgccttaagcacactttattgttgcacatcatcacatgtctgcaacg 188  Q
    |||||||||||| |||||||||||||||||||||||||| ||| ||| ||||| ||||||||||||||| | ||||||||||||||||||| ||||||||    
T  45082547 tgattagcaatggctttaatcgaaacttctcaaatcccaagtactaaattactggccttaagcacacttcactgttgcacatcatcacatgcctgcaacg 45082646  T
Q  189 tagccactactcttagttttttcactagatccttcacgatcaacttgtatttatcacccatc 250  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  45082647 tagccactactcttagttttttcactagatcctccacggtcaacttgtatttatcacccatc 45082708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 252 - 400
Target Start/End: Original strand, 30266314 - 30266468
Alignment:
Q  252 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgc 351  Q
    |||||||||||||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30266314 tatatatagggcatttcaaatgagagcactttttaaatgagagggtgagaggaattaatttagaccgttggatctaaatcaacacttcagatttaattgc 30266413  T
Q  352 tcttt------tgtcatgcaatgtaacatccaccttttctcttctccactctctt 400  Q
    |||||       |||||| | ||||||||||||||||||||||||||||||||||    
T  30266414 tctttaaaaagggtcatggactgtaacatccaccttttctcttctccactctctt 30266468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 252 - 354
Target Start/End: Original strand, 25616843 - 25616945
Alignment:
Q  252 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgc 351  Q
    |||||||| ||||||| |||||| || || ||||||||||||| ||||||| |||||| |||||||||||||| ||||||||  ||||| ||||||||||    
T  25616843 tatatatatggcatttcaaatgagaggactttttaaatgagagggtgagagaaattaacttagaccgttggatttaaatcaaggcttcagatttaattgc 25616942  T
Q  352 tct 354  Q
    |||    
T  25616943 tct 25616945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 42847959 - 42848028
Alignment:
Q  287 aatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 356  Q
    |||||||| ||||||||||||| ||| |||| |||||||||||||||| ||||| |||||||||| ||||    
T  42847959 aatgagagggtgagaggaattagtttggaccattggatctaaatcaacgcttcagatttaattgcacttt 42848028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 45040658 - 45040589
Alignment:
Q  181 ctgcaacgtagccactactcttagttttttcactagatccttcacgatcaacttgtatttatcacccatc 250  Q
    |||||||||||||||||||||||||||||||||||| ||||| |   |||| |||||||| |||||||||    
T  45040658 ctgcaacgtagccactactcttagttttttcactaggtcctttattgtcaagttgtatttgtcacccatc 45040589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 45632433 - 45632374
Alignment:
Q  297 tgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 356  Q
    ||||||||||||||||| |||||||||||||||||||| ||| | |||||||||| ||||    
T  45632433 tgagaggaattaatttaaaccgttggatctaaatcaacgctttagatttaattgcacttt 45632374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 290 - 356
Target Start/End: Complemental strand, 42848674 - 42848608
Alignment:
Q  290 gagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 356  Q
    ||||| |||||| |||||||||| |||||||| |||||||||||| ||||| |||||||||| ||||    
T  42848674 gagagggtgagaagaattaatttggaccgttgaatctaaatcaacgcttcagatttaattgcacttt 42848608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 252 - 401
Target Start/End: Complemental strand, 23732995 - 23732837
Alignment:
Q  252 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgc 351  Q
    |||||||| ||||||| |||  | ||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||     
T  23732995 tatatatatggcatttcaaaatagagcactttttaaatgagagggtgagaggaattaatttagaccgttagatctaaatcaacacttcagatttaattgt 23732896  T
Q  352 tcttt------tgtcatg---caatgtaacatccaccttttctcttctccactctcttt 401  Q
    |||||       ||||||   ||  ||||||||||||||||||||||||||||||||||    
T  23732895 tctttaaaaagggtcatgcaccaccgtaacatccaccttttctcttctccactctcttt 23732837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 19534789 - 19534730
Alignment:
Q  297 tgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 356  Q
    ||||||| |||||||||||| |||||||||||||||||   ||||||| || ||||||||    
T  19534789 tgagagggattaatttagactgttggatctaaatcaacggctcaaattaaaatgctcttt 19534730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 14237438 - 14237386
Alignment:
Q  252 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagagga 304  Q
    |||||||| ||||||| |||| | ||||| ||||||||||||| |||||||||    
T  14237438 tatatatatggcatttcaaataagagcactttttaaatgagagggtgagagga 14237386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 51097551 - 51097587
Alignment:
Q  297 tgagaggaattaatttagaccgttggatctaaatcaa 333  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  51097551 tgagaggaattaatttcgaccgttggatttaaatcaa 51097587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 44495153 - 44495085
Alignment:
Q  282 ttttaaatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattg 350  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44495153 ttttaaatgagagggtgagaggaattaatttagaccgttggatctaaatcaacgcttcaaatttaattg 44495085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 29378278 - 29378191
Alignment:
Q  163 ttgcacatcatcacatgtctgcaacgtagccactactcttagttttttcactagatccttcacgatcaacttgtatttatcacccatc 250  Q
    |||||||||||||||||  |||||| |||||||| ||||||||||||||||||||||||||||  |||| |||||||||| |||||||    
T  29378278 ttgcacatcatcacatgcttgcaacatagccacttctcttagttttttcactagatccttcactgtcaagttgtatttattacccatc 29378191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 9044179 - 9044231
Alignment:
Q  252 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagagga 304  Q
    ||||||||||||||||||||||| |  || ||||||||||||| |||||||||    
T  9044179 tatatatagggcattttaaatgagatgactttttaaatgagagggtgagagga 9044231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 16723676 - 16723728
Alignment:
Q  252 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagagga 304  Q
    |||||||||||||||| |||||| || || ||| ||||||||| |||||||||    
T  16723676 tatatatagggcatttcaaatgagaggacttttaaaatgagagggtgagagga 16723728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 23546138 - 23546190
Alignment:
Q  252 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagagga 304  Q
    |||||||||||||||| |||||| ||  | ||||||||||||| |||||||||    
T  23546138 tatatatagggcatttcaaatgagagggcattttaaatgagagggtgagagga 23546190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 23546961 - 23546909
Alignment:
Q  252 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagagga 304  Q
    |||||||||||||||| |||||| ||  | ||||||||||||| |||||||||    
T  23546961 tatatatagggcatttcaaatgagagagctttttaaatgagagggtgagagga 23546909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 269 - 356
Target Start/End: Original strand, 4427880 - 4427967
Alignment:
Q  269 aaatgaaagcaccttttaaatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 356  Q
    ||||||||  || |||||||| |||| |||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||    
T  4427880 aaatgaaaagactttttaaattagagggtgagaggaattaatttagaccgttgaatctaaatcgacactttaaatttaattgctcttt 4427967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 286 - 356
Target Start/End: Original strand, 33573280 - 33573350
Alignment:
Q  286 aaatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 356  Q
    |||||||||  |||||||||||||||||||||||| |||| |||||||| | ||| ||||||||| |||||    
T  33573280 aaatgagaggctgagaggaattaatttagaccgttagatcaaaatcaacgcctcagatttaattgttcttt 33573350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 14098489 - 14098541
Alignment:
Q  252 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagagga 304  Q
    ||||||||||||||||||||||| || || ||||||||||||| |||||||||    
T  14098489 tatatatagggcattttaaatgagaggactttttaaatgagagggtgagagga 14098541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 14098448 - 14098379
Alignment:
Q  287 aatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 356  Q
    ||||||||  ||| |||||||||||| |||| ||||| | |||||||| ||||| |||||||||||||||    
T  14098448 aatgagaggatgacaggaattaatttggaccattggaacaaaatcaacgcttcagatttaattgctcttt 14098379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 41609534 - 41609603
Alignment:
Q  287 aatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 356  Q
    ||||||||  ||||||||||||||||  ||| ||||||| |||||||| | ||| |||||||||||||||    
T  41609534 aatgagaggatgagaggaattaatttgaaccattggatcaaaatcaacgcatcagatttaattgctcttt 41609603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 210472 - 210403
Alignment:
Q  287 aatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 356  Q
    ||||||||  ||| |||||||||| | |||| ||||||| |||||||| ||| | |||||||||||||||    
T  210472 aatgagaggatgaaaggaattaatctggaccattggatcaaaatcaacgctttagatttaattgctcttt 210403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 264 - 353
Target Start/End: Complemental strand, 5941426 - 5941337
Alignment:
Q  264 attttaaatgaaagcaccttttaaatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctc 353  Q
    ||||||||||| || || ||||||| ||||| ||||||||||||||| ||||| ||| ||||||||||||| ||||| || |||||||||    
T  5941426 attttaaatgagaggactttttaaacgagagggtgagaggaattaatatagacagttagatctaaatcaacgcttcagatataattgctc 5941337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 356
Target Start/End: Original strand, 50185305 - 50185375
Alignment:
Q  286 aaatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 356  Q
    ||||||||| ||||||||||||||||||||||||| |||| |||||||| | ||| ||||||||| |||||    
T  50185305 aaatgagagggtgagaggaattaatttagaccgttagatcaaaatcaacgcctcagatttaattgttcttt 50185375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 49648256 - 49648187
Alignment:
Q  287 aatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 356  Q
    |||||||| ||||||||||||||||| |||| ||  |||||||||||| ||||| |||||||||| ||||    
T  49648256 aatgagagggtgagaggaattaatttggaccatttaatctaaatcaacgcttcagatttaattgcacttt 49648187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 43428469 - 43428521
Alignment:
Q  252 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagagga 304  Q
    |||||| |||||||||||||||| || || ||||||||||||| |||||||||    
T  43428469 tatataaagggcattttaaatgagaggactttttaaatgagagggtgagagga 43428521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 24844112 - 24844181
Alignment:
Q  287 aatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 356  Q
    ||||||||  |||||| ||||||| |  ||| ||||||| |||||||| ||||| |||||||||||||||    
T  24844112 aatgagagaatgagagaaattaatctgaaccattggatcaaaatcaacgcttcagatttaattgctcttt 24844181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 11381003 - 11380967
Alignment:
Q  297 tgagaggaattaatttagaccgttggatctaaatcaa 333  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  11381003 tgagaggaattaatttcgaccgttggatttaaatcaa 11380967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 19638096 - 19638148
Alignment:
Q  252 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagagga 304  Q
    |||||||||||||||| |||||| || |  ||||||||||||| |||||||||    
T  19638096 tatatatagggcatttcaaatgagaggaatttttaaatgagagggtgagagga 19638148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 356
Target Start/End: Original strand, 51702695 - 51702763
Alignment:
Q  288 atgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 356  Q
    |||||||  |||||||||||||| | || | ||||||| ||||||||  |||| |||||||||||||||    
T  51702695 atgagaggatgagaggaattaatctggatcattggatcaaaatcaacgtttcagatttaattgctcttt 51702763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 46889353 - 46889422
Alignment:
Q  287 aatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 356  Q
    |||||||| ||||||||||||||||||||||||| |||| |||||||||| ||| ||||||||| |||||    
T  46889353 aatgagagggtgagaggaattaatttagaccgttagatcaaaatcaacacctcagatttaattgttcttt 46889422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 252 - 356
Target Start/End: Complemental strand, 20111958 - 20111854
Alignment:
Q  252 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgc 351  Q
    |||||||| | ||||| |||| | || || ||| |||||||||  |||||||||||||||| || ||||||||||||||| || |||||||||||||| |    
T  20111958 tatatatatgacatttcaaataagaggacttttaaaatgagaggatgagaggaattaattttgatcgttggatctaaatcgacgcttcaaatttaattac 20111859  T
Q  352 tcttt 356  Q
    |||||    
T  20111858 tcttt 20111854  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 1093209 - 1093268
Alignment:
Q  297 tgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 356  Q
    ||||||||||||||||||||||||||||||||||||||  |||| || | ||||||||||    
T  1093209 tgagaggaattaatttagaccgttggatctaaatcaacgtttcagatgttattgctcttt 1093268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 37915435 - 37915504
Alignment:
Q  287 aatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 356  Q
    ||||||||  |||||||||||||| |||||| ||||||| |||||||| ||||| ||||||||| |||||    
T  37915435 aatgagaggatgagaggaattaatctagaccattggatcaaaatcaacgcttcagatttaattgttcttt 37915504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 49308157 - 49308226
Alignment:
Q  287 aatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 356  Q
    ||||||||  |||||||||||||||| || | ||||||| |||||||| ||||| |||||||||||||||    
T  49308157 aatgagaggatgagaggaattaatttggatcattggatcaaaatcaacgcttcagatttaattgctcttt 49308226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 53467311 - 53467242
Alignment:
Q  287 aatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 356  Q
    ||||||||  |||||||||||||| | || | ||||||| |||||||| |||||||||||||||||||||    
T  53467311 aatgagaggatgagaggaattaatctggatcattggatcaaaatcaacgcttcaaatttaattgctcttt 53467242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 297 - 352
Target Start/End: Complemental strand, 50704366 - 50704311
Alignment:
Q  297 tgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgct 352  Q
    |||||||||||||| | |||| ||||||| |||||||| ||||| |||||||||||    
T  50704366 tgagaggaattaatctggaccattggatcaaaatcaacgcttcagatttaattgct 50704311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 36863922 - 36863959
Alignment:
Q  297 tgagaggaattaatttagaccgttggatctaaatcaac 334  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  36863922 tgagagggattaatttagactgttggatctaaatcaac 36863959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 11617409 - 11617461
Alignment:
Q  252 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagagga 304  Q
    |||||||| ||||||| |||| ||||||  ||||||||||||| |||||||||    
T  11617409 tatatatatggcatttcaaataaaagcattttttaaatgagagggtgagagga 11617461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 40934885 - 40934833
Alignment:
Q  252 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagagga 304  Q
    |||||||||||||||| |||| | || || ||||||||||||| |||||||||    
T  40934885 tatatatagggcatttcaaataagaggacattttaaatgagagggtgagagga 40934833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 42745671 - 42745730
Alignment:
Q  297 tgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 356  Q
    |||||||||||||||| ||||||||||||||||||||| ||||| |||||||||| ||||    
T  42745671 tgagaggaattaatttggaccgttggatctaaatcaacgcttcagatttaattgcacttt 42745730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 42418242 - 42418172
Alignment:
Q  286 aaatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 356  Q
    ||||||||| ||||||||||||||||||||||||| |||| |||||||| | ||| ||||||||| |||||    
T  42418242 aaatgagagggtgagaggaattaatttagaccgttagatcaaaatcaacgcctcagatttaattgttcttt 42418172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 9146091 - 9146160
Alignment:
Q  287 aatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 356  Q
    ||||||||  |||||||||||||||| |||  ||||||| |||||||| ||||| ||||||||| |||||    
T  9146091 aatgagaggatgagaggaattaatttggacatttggatcaaaatcaacgcttcagatttaattgttcttt 9146160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 12294299 - 12294226
Alignment:
Q  283 tttaaatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 356  Q
    ||||||||||||  ||||| |||||||| |  ||| ||||||| |||||||| ||||| |||||||||||||||    
T  12294299 tttaaatgagaggatgagatgaattaatctgaaccattggatcaaaatcaacgcttcatatttaattgctcttt 12294226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 32577394 - 32577325
Alignment:
Q  287 aatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 356  Q
    ||||||||  |||||||||||||| |  ||| ||||||| |||||||| ||||| |||||||||||||||    
T  32577394 aatgagaggatgagaggaattaatctgaaccattggatcaaaatcaacgcttcagatttaattgctcttt 32577325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 43448574 - 43448522
Alignment:
Q  252 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagagga 304  Q
    |||||||||| ||||| |||||| || |||||||||||||||| |||||||||    
T  43448574 tatatataggacatttcaaatgagaggaccttttaaatgagagggtgagagga 43448522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Complemental strand, 31077769 - 31077732
Alignment:
Q  297 tgagaggaattaatttagaccgttggatctaaatcaac 334  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  31077769 tgagaggaattaatttagaccgttagatcaaaatcaac 31077732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 356
Target Start/End: Original strand, 12293490 - 12293562
Alignment:
Q  284 ttaaatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 356  Q
    |||||||||||  |||||| ||||||| | || | ||||||| |||||||| ||||| ||||||||| |||||    
T  12293490 ttaaatgagaggatgagagaaattaatctggatcattggatcaaaatcaacgcttcagatttaattggtcttt 12293562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 19068458 - 19068510
Alignment:
Q  252 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagagga 304  Q
    |||||| ||||||||| |||||| || || ||||||||||||| |||||||||    
T  19068458 tatatagagggcatttcaaatgagaggactttttaaatgagagggtgagagga 19068510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 259 - 356
Target Start/End: Complemental strand, 18970703 - 18970606
Alignment:
Q  259 agggcattttaaatgaaagcaccttttaaatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 356  Q
    ||||||||| |||| | || || ||| |||||||||  |||||||||||||||| || ||||||||||||||| || |||||||||||| | ||||||    
T  18970703 agggcatttcaaataagaggacttttaaaatgagaggatgagaggaattaattttgatcgttggatctaaatcgacgcttcaaatttaactactcttt 18970606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 20508604 - 20508656
Alignment:
Q  252 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagagga 304  Q
    |||||||||||||||| |||||| |  || ||||||||||||| |||||||||    
T  20508604 tatatatagggcatttcaaatgagatgactttttaaatgagagggtgagagga 20508656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1370 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1370
Description:

Target: scaffold1370; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 310
Target Start/End: Original strand, 195 - 253
Alignment:
Q  252 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagaggaattaat 310  Q
    |||||||||||||||| |||||| || || |||||||||||||  |||||||| |||||    
T  195 tatatatagggcatttcaaatgagaggactttttaaatgagaggatgagaggagttaat 253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 349
Target Start/End: Complemental strand, 23751 - 23689
Alignment:
Q  287 aatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaatt 349  Q
    ||||||||  |||||||||||||| |||| | ||||||| |||||||| ||||| ||||||||    
T  23751 aatgagaggatgagaggaattaatatagatcattggatcaaaatcaacgcttcagatttaatt 23689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 28147 - 28199
Alignment:
Q  252 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagagga 304  Q
    |||||||||||||||| |||| | || || ||||||||||||| |||||||||    
T  28147 tatatatagggcatttcaaataagaggactttttaaatgagagggtgagagga 28199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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