View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12169_low_7 (Length: 308)
Name: NF12169_low_7
Description: NF12169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12169_low_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 91 - 308
Target Start/End: Complemental strand, 38581003 - 38580786
Alignment:
| Q |
91 |
ttatcagtgtcaactgctataaccatcagaaccaaacaaagaataaagacaaaattgtaacaaaacataagtagagtgacccataagaaagtaatgaaca |
190 |
Q |
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| T |
38581003 |
ttatcagtgtcaactgctataaccatcagaaccaaacaaagaataaagacaaaattgtaacaaaacataagtagagtgacccataagaaagtaatgaaca |
38580904 |
T |
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| Q |
191 |
aacgcttgaaaacgttaggaattgctgaaatggtgtttgaaaaagacaccggctttgaggtgtagagagaagcgacagtgaaaacgacagcagcggtgga |
290 |
Q |
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| T |
38580903 |
aacgcttgaaaacgttaggaattgctgaaatggtgtttgaaaaagacaccggctttgaggtgtagagagaagcgacagtgaaaacgacagcagcggtgga |
38580804 |
T |
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| Q |
291 |
gaggagagagaaagcgaa |
308 |
Q |
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| T |
38580803 |
gaggagagagaaagcgaa |
38580786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 88 - 305
Target Start/End: Complemental strand, 6883826 - 6883609
Alignment:
| Q |
88 |
gagttatcagtgtcaactgctataaccatcagaaccaaacaaagaataaagacaaaattgtaacaaaacataagtagagtgacccataagaaagtaatga |
187 |
Q |
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| T |
6883826 |
gagttatcagtatcaattgctacaaccataagaaccaaacaaagaacaaaaagaaaattgtaacaaatcataagtagagtgacccacaagaaagtaatga |
6883727 |
T |
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| Q |
188 |
acaaacgcttgaaaacgttaggaattgctgaaatggtgtttgaaaaagacaccggctttgaggtgtagagagaagcgacagtgaaaacgacagcagcggt |
287 |
Q |
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| T |
6883726 |
acaaacgcttaaaaactttaggaattgctgaaatagtgtttgaaaaagaaacaggctttgaggtgtagagagaagcgacggtgaaaacgacggcggcggt |
6883627 |
T |
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| Q |
288 |
ggagaggagagagaaagc |
305 |
Q |
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| T |
6883626 |
ggagaggagagaaaaagc |
6883609 |
T |
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Back To:
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