View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12169_low_8 (Length: 294)
Name: NF12169_low_8
Description: NF12169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12169_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 12 - 275
Target Start/End: Original strand, 53527516 - 53527779
Alignment:
| Q |
12 |
aacctgtgcaaaactacttttctagggtatacaaaatggaaaaagataagatgacatatgtatgcaattcgaaacggtgataaataagcgcaagtgatgg |
111 |
Q |
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| T |
53527516 |
aaccggtgcaaaactacttttctagggtatacaaaatggaaaaagataagatgacatatgtatgcaattcgaaacggtgataaataagcgcaagtgatgg |
53527615 |
T |
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| Q |
112 |
tgggggtaaaactcaacggaaaatgaaatataggtcaaaaccaaacttgattttgattttaaaagtagagtgattaactataatcatcagaaataatcat |
211 |
Q |
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| T |
53527616 |
tgggggtaaaactcaacggaaaatgaaatataggtcaaaaccaaacttgattttgattttaaaagtagagtgattaactataatcatcagaaataatcat |
53527715 |
T |
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| Q |
212 |
gtacagaactaacacagagtgtacctgaatttggagtgaccttgcagaccatcttggttgtcaa |
275 |
Q |
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| T |
53527716 |
gtacagaactaacacagagtgtacctgaatttggagtgaccttgcagaccatcttggttgtcaa |
53527779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 53515964 - 53516008
Alignment:
| Q |
131 |
aaaatgaaatataggtcaaaaccaaacttgattttgattttaaaa |
175 |
Q |
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| T |
53515964 |
aaaataaaatataggtcagagtcaaacttgattttgattttaaaa |
53516008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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