View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12169_low_9 (Length: 272)
Name: NF12169_low_9
Description: NF12169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12169_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 38580554 - 38580744
Alignment:
| Q |
1 |
caacatcccaaacatcttaaaagaatcaatttcaattccaaaaatttcccctaaaaccttctacttaattaccctaatcctaattttccctctttcattt |
100 |
Q |
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| T |
38580554 |
caacatcccaaacatcttaaaagaatcaatttcaattccaaaaatttcccctaaaaccttctacttaattaccctaatcctaattttccctctttcattt |
38580653 |
T |
|
| Q |
101 |
gcaatcttagctcattcacttttcacacaccccttaatttctcacattgaatctcctttcactgatcctgcacaaacctctcatgattgga |
191 |
Q |
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| T |
38580654 |
gcaatcttagcacattcacttttcacacaccccttaatttctcacattgaatctcctttcactgatcctgcacaaacctctcatgattgga |
38580744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 6883374 - 6883564
Alignment:
| Q |
1 |
caacatcccaaacatcttaaaagaatcaatttcaattccaaaaatttcccctaaaaccttctacttaattaccctaatcctaattttccctctttcattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
6883374 |
caacatcccaaacatcttaaaagaatcaatttcaatccctaaaatttcccctaaaaccttctacttaattaccctaaccctaattttccctctttctttt |
6883473 |
T |
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| Q |
101 |
gcaatcttagctcattcacttttcacacaccccttaatttctcacattgaatctcctttcactgatcctgcacaaacctctcatgattgga |
191 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6883474 |
gcaattttagctcattcccttttcacacaccccttaatttctcagcttcaatctcctttcactgatccttcacaaacctctcatgattgga |
6883564 |
T |
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