View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12170_high_1 (Length: 600)

Name: NF12170_high_1
Description: NF12170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12170_high_1
NF12170_high_1
[»] chr5 (4 HSPs)
chr5 (32-578)||(6965131-6965692)
chr5 (224-297)||(8610314-8610387)
chr5 (254-311)||(24172672-24172729)
chr5 (248-304)||(29037074-29037130)
[»] chr7 (3 HSPs)
chr7 (225-304)||(32910627-32910705)
chr7 (239-311)||(35880146-35880218)
chr7 (258-309)||(10935204-10935255)
[»] chr1 (2 HSPs)
chr1 (248-296)||(46170404-46170452)
chr1 (437-498)||(26631443-26631504)
[»] scaffold0024 (2 HSPs)
scaffold0024 (253-300)||(138445-138492)
scaffold0024 (253-307)||(132622-132676)
[»] chr2 (2 HSPs)
chr2 (253-304)||(37300002-37300053)
chr2 (239-296)||(4931585-4931642)
[»] chr4 (3 HSPs)
chr4 (253-294)||(22664045-22664086)
chr4 (253-294)||(22668524-22668565)
chr4 (251-304)||(45121161-45121214)
[»] chr8 (1 HSPs)
chr8 (252-296)||(26901497-26901541)


Alignment Details
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 32 - 578
Target Start/End: Original strand, 6965131 - 6965692
Alignment:
Q  32 tctatccaaccctctgttattagttttagttaactttttgttagtaggtttttgccggcttaatttcgtttgttcaataatttgggttgttctatcttta 131  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6965131 tctaaccaaccctctgttattagttttagttaactttttgttagtaggtttttgccggcttaatttcatttgttcaataatttgggttgttctatcttta 6965230  T
Q  132 tataagccaacttagtgcatgtttggattggctctgaatgtgagattgttaaagttaagaattaagatgaattgccgtgatttttgttaaagttatactc 231  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||         || |||||||    
T  6965231 tataagccaacttagtgcatgtttggattgtctctgaatgtgagattgttaaagttaagaattaagatgaattgccgtgat---------agctatactc 6965321  T
Q  232 cctcgagtcttatatttaagcaaaaagtcaaatgtatttaattcaaatttggaccaaatacatttgattttttcttat---------------------- 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                          
T  6965322 cctcgagtcttatatttaagcaaaaagtcaaatgtatttaattcaaatttggaccaaatacatttgattttttcttatatatatatatatatatatatat 6965421  T
Q  310 atatataatactggagggaatactttttagcctcaacacagtgctacaatgaatttgccaatctaaccactcatccagacatatacttcactgttcatcc 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6965422 atatataatactggagggaatactttttagcctcaacacagtgctaggatgaatttgccaatctaaccactcatccagacatatacttcactgttcgtcc 6965521  T
Q  410 aaacatatactttgctagtaatgagtttggcagaatcacgttgtagcactgtaattttggcaaaagctacactttaa-gtttcaacaaaattctggcagt 508  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6965522 aaacatatactttgcttgtaatgagtttggcagaatcacgttgtagcactgtaattttggcaaaagctacactttaaggtttcaacaaaattctggcagt 6965621  T
Q  509 ttcaacaaaattacatcataatgattttgcaaactcacttttaagtactagta-tgcacttagagtatctc 578  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6965622 ttcaacaaaattacatcataatgattttgcaaactcacttttaagtactagtattgcacttagagtatctc 6965692  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 224 - 297
Target Start/End: Original strand, 8610314 - 8610387
Alignment:
Q  224 ttatactccctcgagtcttatatttaagcaaaaagtcaaatgtatttaattcaaatttggaccaaatacatttg 297  Q
    ||||||||||| |||||||| || ||  |||||||||||||| |||||||  ||||||  ||||||||||||||    
T  8610314 ttatactcccttgagtcttaaatatacacaaaaagtcaaatggatttaatctaaatttataccaaatacatttg 8610387  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 311
Target Start/End: Complemental strand, 24172729 - 24172672
Alignment:
Q  254 aaaagtcaaatgtatttaattcaaatttggaccaaatacatttgattttttcttatat 311  Q
    |||||||||||||||||  || ||| || |||||||||||||||| |||| |||||||    
T  24172729 aaaagtcaaatgtattttgtttaaacttagaccaaatacatttgaattttacttatat 24172672  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 29037074 - 29037130
Alignment:
Q  248 taagcaaaaagtcaaatgtatttaattcaaatttggaccaaatacatttgatttttt 304  Q
    |||||||||||||||||||||||  |||| |||||||||| ||| ||| || |||||    
T  29037074 taagcaaaaagtcaaatgtatttggttcatatttggaccagatatattcgacttttt 29037130  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 304
Target Start/End: Complemental strand, 32910705 - 32910627
Alignment:
Q  225 tatactccctcgagtcttatatttaagcaaaaagtcaaatgtatttaattcaaatttggaccaaatacatttgatttttt 304  Q
    ||||||||||| | ||||| || ||| ||||||||||||| ||||| ||| ||||||||||||||||||||||| |||||    
T  32910705 tatactccctcca-tcttaaatataatcaaaaagtcaaatatatttgatttaaatttggaccaaatacatttgacttttt 32910627  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 311
Target Start/End: Original strand, 35880146 - 35880218
Alignment:
Q  239 tcttatatttaagcaaaaagtcaaatgtatttaattcaaatttggaccaaatacatttgattttttcttatat 311  Q
    ||||| || ||| |||||||||||||   ||| ||| |||||||||||||||| |||||||||||||||||||    
T  35880146 tcttaaatataaacaaaaagtcaaatacgtttgatttaaatttggaccaaatatatttgattttttcttatat 35880218  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 10935204 - 10935255
Alignment:
Q  258 gtcaaatgtatttaattcaaatttggaccaaatacatttgattttttcttat 309  Q
    |||||||||||||| ||||||||||||| |||||||||| | ||||| ||||    
T  10935204 gtcaaatgtatttagttcaaatttggactaaatacatttaacttttttttat 10935255  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 46170404 - 46170452
Alignment:
Q  248 taagcaaaaagtcaaatgtatttaattcaaatttggaccaaatacattt 296  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||||    
T  46170404 taagtaaaaagtcaaatgtatttaatctaaatttggaccaaatacattt 46170452  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 498
Target Start/End: Original strand, 26631443 - 26631504
Alignment:
Q  437 tggcagaatcacgttgtagcactgtaattttggcaaaagctacactttaagtttcaacaaaa 498  Q
    ||||||||||||  | || ||| ||||||||||||||||||||| || || |||||||||||    
T  26631443 tggcagaatcactatttaccacggtaattttggcaaaagctacaattaaaatttcaacaaaa 26631504  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 300
Target Start/End: Original strand, 138445 - 138492
Alignment:
Q  253 aaaaagtcaaatgtatttaattcaaatttggaccaaatacatttgatt 300  Q
    |||||||||| | ||||| |||||||||| ||||||||||||||||||    
T  138445 aaaaagtcaattctatttgattcaaatttagaccaaatacatttgatt 138492  T

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Target: scaffold0024; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 132676 - 132622
Alignment:
Q  253 aaaaagtcaaatgtatttaattcaaatttggaccaaatacatttgattttttctt 307  Q
    ||||||||||||||||||  || ||| ||||||||||||||||||| ||| ||||    
T  132676 aaaaagtcaaatgtatttggtttaaagttggaccaaatacatttgactttatctt 132622  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 304
Target Start/End: Original strand, 37300002 - 37300053
Alignment:
Q  253 aaaaagtcaaatgtatttaattcaaatttggaccaaatacatttgatttttt 304  Q
    |||||||| |||||||||| || ||||||| ||||||||||||||| |||||    
T  37300002 aaaaagtcgaatgtatttagttgaaatttgaaccaaatacatttgacttttt 37300053  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 296
Target Start/End: Complemental strand, 4931642 - 4931585
Alignment:
Q  239 tcttatatttaagcaaaaagtcaaatgtatttaattcaaatttggaccaaatacattt 296  Q
    ||||| || ||| ||||||||||||||||||| ||||||||||  | |||||||||||    
T  4931642 tcttaaatataaacaaaaagtcaaatgtatttgattcaaatttaaatcaaatacattt 4931585  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 294
Target Start/End: Original strand, 22664045 - 22664086
Alignment:
Q  253 aaaaagtcaaatgtatttaattcaaatttggaccaaatacat 294  Q
    ||||||||  ||||||||| ||||||||||||||||||||||    
T  22664045 aaaaagtcttatgtatttagttcaaatttggaccaaatacat 22664086  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 294
Target Start/End: Original strand, 22668524 - 22668565
Alignment:
Q  253 aaaaagtcaaatgtatttaattcaaatttggaccaaatacat 294  Q
    ||||||||  ||||||||| ||||||||||||||||||||||    
T  22668524 aaaaagtcttatgtatttagttcaaatttggaccaaatacat 22668565  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 45121161 - 45121214
Alignment:
Q  251 gcaaaaagtcaaatgtatttaattcaaatttggaccaaatacatttgatttttt 304  Q
    ||||||| | |||||||||| ||| |||||||||| |||||||||||| |||||    
T  45121161 gcaaaaatttaaatgtatttgatttaaatttggactaaatacatttgacttttt 45121214  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 26901497 - 26901541
Alignment:
Q  252 caaaaagtcaaatgtatttaattcaaatttggaccaaatacattt 296  Q
    ||||||||||||||||||| ||| ||||||| || ||||||||||    
T  26901497 caaaaagtcaaatgtatttgatttaaatttgaacaaaatacattt 26901541  T

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