View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12170_high_10 (Length: 342)
Name: NF12170_high_10
Description: NF12170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12170_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 45144087 - 45144425
Alignment:
| Q |
1 |
ataacagatacaaacgacctcactacaagaaccaaaattctgatagaacacgtgattacatctatgaatttgccgtaaaaatttctataacaaagggcat |
100 |
Q |
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| T |
45144087 |
ataacagatacaaacgacctcactacaagaaccaaaattctgatagaacacgtgattacatctatggatttgctgtaaaaatttctataacaaagggcat |
45144186 |
T |
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| Q |
101 |
tgagatgtcggctttccaccatgaattttgaacaatgtaaacaacgaataaagaatggaagttaacctaaacgaccacaacaccttcaatgagtaaaaac |
200 |
Q |
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| T |
45144187 |
tgagatgtcggctttccaccatgaattttgaacaatgtaaacaacgaataaaaaatggaagttaacctaaacgaccacaacaccttcaatgagtaaaaac |
45144286 |
T |
|
| Q |
201 |
cacactcagttttgactaggtgaggaaagcgaatggtttagtatctacacttacattataaaaacctaaattgttagactagcgagttatatgccgcatc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45144287 |
cacactcagttttgactaggtgaggaaagcgaatggtttagtatctacacttacattttaaaaacctaaattgttagactagcgagttatatgccgcatc |
45144386 |
T |
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| Q |
301 |
atctgcaacttgaattcaacgaccgatattcttcgacat |
339 |
Q |
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|||||||||||||||||||||||||||||| || ||||| |
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| T |
45144387 |
atctgcaacttgaattcaacgaccgatattattagacat |
45144425 |
T |
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