View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12170_high_13 (Length: 323)
Name: NF12170_high_13
Description: NF12170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12170_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 37464194 - 37463887
Alignment:
| Q |
1 |
aaacttggaatgaagagttccaattacagaattaagtacctgctagatcaaaaatactgctagtataaaagcaaactccgttgattccccccaattgttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37464194 |
aaacttggaatgaagagttccaattacagaattaagtacctgctagatcaaaaatactgctagtataaaagcaaactccgttgattccccccaattgttg |
37464095 |
T |
|
| Q |
101 |
gcagaccataagccctactccaatctaatcatgaagaaaaataggaagatgaaaattttgaatggaaatcacttcagatttacttaatagaatagtaaca |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37464094 |
gcagaccataagccctactccaatctactcatgaagaaaa-taggaagatgaaaattttgaatggaaatcacttcagatttgcttaatagaatagtaaca |
37463996 |
T |
|
| Q |
201 |
tgataagtggaaaataaactatcatattcaaccaatactttattttccacctctcaacatagtagtccaccgtacacattcttgaagaaaatgaactgat |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37463995 |
tgataagtggaaaataaactatcatattcaaccaatactttatcttccacctctcaacatagtagtccatcgtacacattcttgaagaaaatgaactgat |
37463896 |
T |
|
| Q |
301 |
atccagagt |
309 |
Q |
| |
|
||||||||| |
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| T |
37463895 |
atccagagt |
37463887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 49021309 - 49021014
Alignment:
| Q |
1 |
aaacttggaatgaagagttccaattacagaattaagtacctgctagatcaaaaatactgctagtataaaagcaaactccgttgattccccccaattgttg |
100 |
Q |
| |
|
|||| |||||||||||| | ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||| || |
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| T |
49021309 |
aaacatggaatgaagagatacaattacagaattaagtacatgctagatcaaaaatactgccagtataaaagcaaacaccgttgattccccctaattgctg |
49021210 |
T |
|
| Q |
101 |
gcagaccataagccctactccaatctaatcatgaagaaaaataggaagatgaaaattttgaatggaaatcacttcagatttacttaatagaatagtaaca |
200 |
Q |
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|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| |||| ||||| |
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| T |
49021209 |
gcagaccataagccctactccaatctactcatgaagaaaaataggaagatgaaaattttgaatggaaatgagttcagatttgcttaata-aataataaca |
49021111 |
T |
|
| Q |
201 |
tgataagtggaaaataaactatcatattcaaccaatactttattttccacctctcaacatagtagtccaccgtacacattcttgaagaaaatgaact |
297 |
Q |
| |
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||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||| |||| |||||||| |
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| T |
49021110 |
tgagaactggaaaataaactatcatattcaaccactactttattttccacctctcaacctagtagtccaccacacacattcttcaagagaatgaact |
49021014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 37589863 - 37589997
Alignment:
| Q |
1 |
aaacttggaatgaagagttccaattacagaattaagtacctgctagatcaaaaatactgctagtataaaagcaaactccgttgattccccccaattgttg |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||| ||||| || |
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|
| T |
37589863 |
aaacttggaatgaagagttacaattacagaattaagtacctgctagatcaaaaatactgccagtataaaagcaaacaccattgattccccctaattgctg |
37589962 |
T |
|
| Q |
101 |
gcagaccataagccctactccaatctaatcatgaa |
135 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||| |
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|
| T |
37589963 |
gcagaccataagccctaccccaatcttgtcatgaa |
37589997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 37 - 135
Target Start/End: Original strand, 37583512 - 37583610
Alignment:
| Q |
37 |
tacctgctagatcaaaaatactgctagtataaaagcaaactccgttgattccccccaattgttggcagaccataagccctactccaatctaatcatgaa |
135 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||| || ||| |||||||| |||||||| ||||| ||||||||||||||||||||| |||||||| |
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|
| T |
37583512 |
tacctgctaggtcaaaaatactgctagaataaaagctaattccattgattccacccaattgctggcaagccataagccctactccaatctgatcatgaa |
37583610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 37583660 - 37583709
Alignment:
| Q |
132 |
tgaagaaaaataggaagatgaaaattttgaatggaaatcacttcagattt |
181 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||| | |||||| |
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|
| T |
37583660 |
tgaagaaaaataggaagattaaaattttgattggaaatcacatgagattt |
37583709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 37590047 - 37590109
Alignment:
| Q |
132 |
tgaagaaaaataggaagatgaaaattttgaatggaaatcacttcagatttacttaatagaata |
194 |
Q |
| |
|
|||| ||| ||| ||||||||||||||||| |||||||||| | |||||| ||||||| |||| |
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|
| T |
37590047 |
tgaaaaaatatacgaagatgaaaattttgattggaaatcacatgagatttccttaatacaata |
37590109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 37426932 - 37427043
Alignment:
| Q |
1 |
aaacttggaatgaagagttccaattacagaattaagtacctgctagatcaaaaatactgctagtataaaagcaaactccgttgattcccccc-aattgtt |
99 |
Q |
| |
|
|||| |||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||| |||||||| ||||| | |
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| T |
37426932 |
aaacatggaatgaagagatacaattacagaattaagtacatgctagatcaaaaatactgctagtataaaagcaaacaccattggttcccccctaattgct |
37427031 |
T |
|
| Q |
100 |
ggcagaccataa |
111 |
Q |
| |
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|||||||||||| |
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|
| T |
37427032 |
ggcagaccataa |
37427043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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