View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12170_high_14 (Length: 303)

Name: NF12170_high_14
Description: NF12170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12170_high_14
NF12170_high_14
[»] chr6 (3 HSPs)
chr6 (182-274)||(22854511-22854603)
chr6 (155-274)||(18108759-18108880)
chr6 (7-45)||(18108573-18108611)


Alignment Details
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 182 - 274
Target Start/End: Original strand, 22854511 - 22854603
Alignment:
Q  182 aacctttataccaccnnnnnnntataatttcaagctgcaaccaccgcaatacctatcacaataacagtggccgcaacctcagccacaatatat 274  Q
    |||||||||||||||       |||||||||| |||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22854511 aacctttataccaccaaaaaaatataatttcatgctataaccaccgcaatacctatcacaataatagtggccgcaacctcagccacaatatat 22854603  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 155 - 274
Target Start/End: Original strand, 18108759 - 18108880
Alignment:
Q  155 tgaagcagtgacataatagaaataagtaacctttataccaccnnnnnnntata--atttcaagctgcaaccaccgcaatacctatcacaataacagtggc 252  Q
    |||||||||||||||||| ||||| | ||||||||||||| |       ||||  |||||| |||  |||||||||||||||||||||||||| ||||||    
T  18108759 tgaagcagtgacataatataaatatgcaacctttataccaacaaaaaaatatataatttcatgctataaccaccgcaatacctatcacaataatagtggc 18108858  T
Q  253 cgcaacctcagccacaatatat 274  Q
    || |||||||||||||||||||    
T  18108859 cggaacctcagccacaatatat 18108880  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 18108573 - 18108611
Alignment:
Q  7 cagtaaaattatctttcaagtcaacttacaagaatcaat 45  Q
    ||||||||| ||||||||||| |||||||||||||||||    
T  18108573 cagtaaaatcatctttcaagtaaacttacaagaatcaat 18108611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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