View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12170_high_15 (Length: 300)

Name: NF12170_high_15
Description: NF12170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12170_high_15
NF12170_high_15
[»] chr5 (7 HSPs)
chr5 (24-265)||(36203086-36203326)
chr5 (26-143)||(9851294-9851410)
chr5 (26-72)||(2022669-2022715)
chr5 (35-117)||(29006661-29006743)
chr5 (60-143)||(15205483-15205566)
chr5 (146-214)||(9080655-9080724)
chr5 (141-265)||(29006479-29006603)
[»] chr3 (5 HSPs)
chr3 (26-143)||(52653924-52654041)
chr3 (143-265)||(33709824-33709945)
chr3 (136-265)||(52653768-52653896)
chr3 (46-143)||(33709981-33710077)
chr3 (146-229)||(40574317-40574401)
[»] chr1 (8 HSPs)
chr1 (147-265)||(49053788-49053905)
chr1 (35-143)||(49053944-49054052)
chr1 (141-265)||(49061368-49061491)
chr1 (35-143)||(49061524-49061632)
chr1 (26-75)||(44524463-44524512)
chr1 (28-75)||(21432110-21432157)
chr1 (28-75)||(29681303-29681350)
chr1 (26-73)||(48366498-48366545)
[»] chr7 (5 HSPs)
chr7 (29-143)||(12239475-12239590)
chr7 (147-212)||(12239628-12239693)
chr7 (29-143)||(24870567-24870681)
chr7 (26-112)||(37469058-37469144)
chr7 (28-75)||(5436975-5437022)
[»] chr8 (4 HSPs)
chr8 (28-143)||(28695970-28696085)
chr8 (147-265)||(12729385-12729502)
chr8 (40-143)||(12729541-12729644)
chr8 (60-143)||(44729228-44729311)
[»] scaffold0007 (2 HSPs)
scaffold0007 (147-229)||(217778-217861)
scaffold0007 (35-75)||(217956-217996)
[»] chr6 (4 HSPs)
chr6 (147-229)||(11931984-11932066)
chr6 (60-143)||(11932104-11932187)
chr6 (26-72)||(28611998-28612044)
chr6 (28-72)||(21937282-21937326)
[»] chr4 (8 HSPs)
chr4 (35-116)||(48779718-48779799)
chr4 (146-229)||(20251439-20251523)
chr4 (28-75)||(3415597-3415644)
chr4 (28-75)||(3425145-3425192)
chr4 (141-264)||(24391830-24391951)
chr4 (26-73)||(32429731-32429778)
chr4 (28-72)||(18670553-18670597)
chr4 (27-75)||(18736870-18736918)
[»] chr2 (1 HSPs)
chr2 (158-234)||(34681118-34681195)


Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 24 - 265
Target Start/End: Complemental strand, 36203326 - 36203086
Alignment:
Q  24 tcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcacca 123  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || |||||    
T  36203326 tcatcaagaagatgatgaagatgaacataatgaattgtgcacataaatttcatggcgtgtgtgggccacactaacctttaagttcgattcgtccccacca 36203227  T
Q  124 gttatgcaaaccggatgcaatagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattc 223  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  36203226 gttatgccaaccggatgcaatagaatccttgacgtgacttgcacgttcacatcaagtgtatctgcaatggtagcttacaaaataaagttctgacaaattc 36203127  T
Q  224 tctcgtacacctaaagaagagaacgaataatttagtataatt 265  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  36203126 tctcgtaca-ctaaagaagagaacgaataatttagtataatt 36203086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 9851294 - 9851410
Alignment:
Q  26 atcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagt 125  Q
    ||||| || ||||||||||||||||| |||||||||||||||||||||||  ||||||||||| ||||||||| |||| |||| |||| |||| ||||||    
T  9851294 atcaaaaagatgatgaagatgaacatgatgaattgtgcacataaattccaaagcgtgtgtgggacacactaacatttaggttcaattctccct-accagt 9851392  T
Q  126 tatgcaaaccggatgcaa 143  Q
    || || ||||| ||||||    
T  9851393 taagccaaccgaatgcaa 9851410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 2022669 - 2022715
Alignment:
Q  26 atcaagaatatgatgaagatgaacataatgaattgtgcacataaatt 72  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||||||    
T  2022669 atcaagaagatgatgaagatgaacatgatgaaatgtgcacataaatt 2022715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 29006743 - 29006661
Alignment:
Q  35 atgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccc 117  Q
    ||||| |||||||| || |||||  ||||||||||||| ||  ||||||||| | ||||||||| |||| |||||||||||||    
T  29006743 atgatcaagatgaatatgatgaagagtgcacataaatttcaaagcgtgtgtgagacacactaacttttaggttcgattcgccc 29006661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 143
Target Start/End: Complemental strand, 15205566 - 15205483
Alignment:
Q  60 gtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaa 143  Q
    |||| |||||||| ||  ||||||||||| ||||||||| || | |||||||||| || ||||||||||||  || ||||||||    
T  15205566 gtgcccataaatttcaaagcgtgtgtgggacacactaactttgaggttcgattcgtccccaccagttatgccgactggatgcaa 15205483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 9080655 - 9080724
Alignment:
Q  146 gaatccttgacgtgacttgcacgttcacatcaagtgtatcga-caatggtagcttacaaaataaagttct 214  Q
    |||| |||||||| |||||||| ||||||| ||  |||| || ||||||||| |||||||||||||||||    
T  9080655 gaattcttgacgtaacttgcacattcacattaaacgtatagatcaatggtagtttacaaaataaagttct 9080724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 265
Target Start/End: Complemental strand, 29006603 - 29006479
Alignment:
Q  141 caatagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtag-cttacaaaataaagttctgacaaattctctcgtacacctaaag 239  Q
    |||| ||||||||||| |||| | ||| |||||| |||| |||||| ||||| |||  ||||| |||||||||||| ||| || |||||| || ||| |     
T  29006603 caatggaatccttgacatgacatacacattcacaccaagcgtatcgtcaatgttagttttacagaataaagttctgtcaacttatctcgtgca-ctagaa 29006505  T
Q  240 aagagaacgaataatttagtataatt 265  Q
    || |||| |||| |||||||||||||    
T  29006504 aaaagaatgaatgatttagtataatt 29006479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 52654041 - 52653924
Alignment:
Q  26 atcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagt 125  Q
    |||||||| |||||||| |||||||| ||||| |||||||||||||||||  ||||||||||| ||||||||| |||| |||| ||||||||||||||||    
T  52654041 atcaagaagatgatgaaaatgaacatgatgaagtgtgcacataaattccaaagcgtgtgtgggacacactaacctttaggttcaattcgccctcaccagt 52653942  T
Q  126 tatgcaaaccggatgcaa 143  Q
    ||||| ||||||||||||    
T  52653941 tatgccaaccggatgcaa 52653924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 143 - 265
Target Start/End: Complemental strand, 33709945 - 33709824
Alignment:
Q  143 atagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaag 242  Q
    ||||||||||||||||||||||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| |||||||||| || || ||| ||||     
T  33709945 atagaatccttgacgtgacttgcacattcacaccaagcgtatcgacaatggtagtttacagaataaagttctgtcaaattctctggtgca-ctagagaaa 33709847  T
Q  243 agaacgaataatttagtataatt 265  Q
    |||| |||| |||||||||||||    
T  33709846 agaaagaatgatttagtataatt 33709824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 136 - 265
Target Start/End: Complemental strand, 52653896 - 52653768
Alignment:
Q  136 ggatgcaatagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacct 235  Q
    |||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| ||| ||  ||||| || ||    
T  52653896 ggatacaatggaatccttgacgtgacttgcacattcacatcaagtgtatcgacaatggtagtttacagaataaagttctgtcaattttcctcgtgca-ct 52653798  T
Q  236 aaagaagagaacgaataatttagtataatt 265  Q
    | |||| || | |||| |||||||||||||    
T  52653797 agagaaaagtaagaatgatttagtataatt 52653768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 143
Target Start/End: Complemental strand, 33710077 - 33709981
Alignment:
Q  46 gaacataatgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaa 143  Q
    |||||| ||||| ||||||| |||||||||  ||||||||||| ||||||||| |||| | ||||||| ||  |||||||||||  ||||||||||||    
T  33710077 gaacatgatgaagtgtgcac-taaattccaaagcgtgtgtgggacacactaacctttaggatcgattcacctccaccagttatgtcaaccggatgcaa 33709981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 229
Target Start/End: Original strand, 40574317 - 40574401
Alignment:
Q  146 gaatccttgacgtgacttgcacgttcacatcaagtgtatcga-caatggtagcttacaaaataaagttctgacaaattctctcgt 229  Q
    ||||| |||||||||||||||| ||||||  ||| ||||| | ||||| ||| ||||| |||||||||||| ||| |||||||||    
T  40574317 gaatctttgacgtgacttgcacattcacacgaagcgtatcaatcaatgatagtttacagaataaagttctgtcaatttctctcgt 40574401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 147 - 265
Target Start/End: Complemental strand, 49053905 - 49053788
Alignment:
Q  147 aatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagagaa 246  Q
    ||||||||||||||||||||| |||||| ||||  ||||||||||||||| |||||||||||||||||| ||| ||| ||||| || ||| |||||||||    
T  49053905 aatccttgacgtgacttgcacattcacaccaagcatatcgacaatggtagtttacaaaataaagttctgccaatttccctcgtgca-ctagagaagagaa 49053807  T
Q  247 cgaataatttagtataatt 265  Q
     |||| |||||||||||||    
T  49053806 agaatgatttagtataatt 49053788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 143
Target Start/End: Complemental strand, 49054052 - 49053944
Alignment:
Q  35 atgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagttatgcaaac 134  Q
    |||| |||||||||||| ||||| ||| |||||||||||||  |||||||||||  |||||||| |||| ||||||||||||| |||||||||| | |||    
T  49054052 atgaagaagatgaacatgatgaagtgtacacataaattccaatgcgtgtgtgggaaacactaacctttaggttcgattcgcccccaccagttataccaac 49053953  T
Q  135 cggatgcaa 143  Q
     ||||||||    
T  49053952 tggatgcaa 49053944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 265
Target Start/End: Complemental strand, 49061491 - 49061368
Alignment:
Q  141 caatagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaaga 240  Q
    |||| ||||||||||||||| |||||| |||||| |||   ||||||||||||||| ||||| ||||||||| || ||| ||| ||||| || ||| |||    
T  49061491 caatggaatccttgacgtgatttgcacattcacaccaaacatatcgacaatggtagtttacagaataaagttttgtcaatttccctcgtgca-ctagaga 49061393  T
Q  241 agagaacgaataatttagtataatt 265  Q
    | |||| |||| |||||||||||||    
T  49061392 aaagaaagaatgatttagtataatt 49061368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 143
Target Start/End: Complemental strand, 49061632 - 49061524
Alignment:
Q  35 atgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagttatgcaaac 134  Q
    |||| |||||||||||| ||||| ||||||||||||||| |  |||||||||||  ||||||   |||| ||||||||||||| |||||||||||| |||    
T  49061632 atgaagaagatgaacatgatgaagtgtgcacataaattctaaagcgtgtgtgggaaacactagtctttaggttcgattcgcccccaccagttatgccaac 49061533  T
Q  135 cggatgcaa 143  Q
      |||||||    
T  49061532 tagatgcaa 49061524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 44524512 - 44524463
Alignment:
Q  26 atcaagaatatgatgaagatgaacataatgaattgtgcacataaattcca 75  Q
    |||||||| ||||||||||||||||| ||||| | |||||||||||||||    
T  44524512 atcaagaagatgatgaagatgaacatgatgaagtatgcacataaattcca 44524463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 21432157 - 21432110
Alignment:
Q  28 caagaatatgatgaagatgaacataatgaattgtgcacataaattcca 75  Q
    |||||| |||||||||||||||||  |||| |||||||||||||||||    
T  21432157 caagaagatgatgaagatgaacatgctgaagtgtgcacataaattcca 21432110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 29681303 - 29681350
Alignment:
Q  28 caagaatatgatgaagatgaacataatgaattgtgcacataaattcca 75  Q
    |||||| ||||||||||||||||| ||||| |||||| ||||||||||    
T  29681303 caagaagatgatgaagatgaacatgatgaagtgtgcaaataaattcca 29681350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 48366545 - 48366498
Alignment:
Q  26 atcaagaatatgatgaagatgaacataatgaattgtgcacataaattc 73  Q
    |||||||| ||||||||||||||||| ||||| |||||| ||||||||    
T  48366545 atcaagaagatgatgaagatgaacatgatgaagtgtgcaaataaattc 48366498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 12239475 - 12239590
Alignment:
Q  29 aagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagttat 128  Q
    ||||| ||||||| |||||| || ||||| |||||||||||||| ||  ||||||||||| |||| |||| |||| ||||||||||||| ||||||||||    
T  12239475 aagaagatgatgatgatgaatatgatgaagtgtgcacataaatttcaaagcgtgtgtgggacacattaacctttaggttcgattcgcccccaccagttat 12239574  T
Q  129 g-caaaccggatgcaa 143  Q
    | ||||||||||||||    
T  12239575 gtcaaaccggatgcaa 12239590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 12239628 - 12239693
Alignment:
Q  147 aatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagtt 212  Q
    ||||||||||||||||||||| |||||| |||| |||||||||||||||| || || |||||||||    
T  12239628 aatccttgacgtgacttgcacattcacaccaagcgtatcgacaatggtagtttccagaataaagtt 12239693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 24870681 - 24870567
Alignment:
Q  29 aagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagttat 128  Q
    ||||| |||||||||||  |||| ||||||  | |||||||||||||   | ||| |||| ||  ||||| ||||||||||||||||||  |||||||||    
T  24870681 aagaagatgatgaagatagacatgatgaataatacacataaattccacatcttgtatgggacatgctaacctttaagttcgattcgcccctaccagttat 24870582  T
Q  129 gcaaaccggatgcaa 143  Q
    || ||||||||||||    
T  24870581 gccaaccggatgcaa 24870567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 37469144 - 37469058
Alignment:
Q  26 atcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgatt 112  Q
    |||||||| ||||||||||||||||| || || |||||||||||||| ||  | ||||||||| ||||||||| |||| ||| ||||    
T  37469144 atcaagaagatgatgaagatgaacatgattaaatgtgcacataaatttcaaagtgtgtgtgggacacactaacctttaggtttgatt 37469058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 5437022 - 5436975
Alignment:
Q  28 caagaatatgatgaagatgaacataatgaattgtgcacataaattcca 75  Q
    |||||| ||||||||||||||||| ||||| |||||| ||||||||||    
T  5437022 caagaagatgatgaagatgaacatgatgaagtgtgcaaataaattcca 5436975  T

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Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 28 - 143
Target Start/End: Original strand, 28695970 - 28696085
Alignment:
Q  28 caagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagtta 127  Q
    |||||| |||||||| |||||||| |||||   ||| |||||||||||  ||||||||||| ||||||||| |||| ||| |||||||||||||||||||    
T  28695970 caagaagatgatgaatatgaacatgatgaagaatgcgcataaattccaaagcgtgtgtgggacacactaacttttaggtttgattcgccctcaccagtta 28696069  T
Q  128 tgcaaaccggatgcaa 143  Q
    ||  |||| |||||||    
T  28696070 tgtcaaccagatgcaa 28696085  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 147 - 265
Target Start/End: Complemental strand, 12729502 - 12729385
Alignment:
Q  147 aatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagagaa 246  Q
    |||||||||| |||||||||| |||||| ||||  |||||||||| |||| ||||  |||||||||||| ||| ||||||||| || ||| |||| ||||    
T  12729502 aatccttgacatgacttgcacattcacaccaagcatatcgacaattgtagtttactgaataaagttctgtcaatttctctcgtgca-ctagagaaaagaa 12729404  T
Q  247 cgaataatttagtataatt 265  Q
     |||| |||||||||||||    
T  12729403 agaattatttagtataatt 12729385  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 40 - 143
Target Start/End: Complemental strand, 12729644 - 12729541
Alignment:
Q  40 gaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagttatgcaaaccggat 139  Q
    |||||||||||| |||||  || ||||| |||||||  | ||||||||| ||||||||| |||| || |||||||||  |||||||||||| ||||||||    
T  12729644 gaagatgaacatgatgaaaagtacacatgaattccaaagagtgtgtgggacacactaacctttaggtacgattcgcctccaccagttatgccaaccggat 12729545  T
Q  140 gcaa 143  Q
    ||||    
T  12729544 gcaa 12729541  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 143
Target Start/End: Complemental strand, 44729311 - 44729228
Alignment:
Q  60 gtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaa 143  Q
    ||||||||||||||||  |||||||||||  |||||||| |||| |||| |||| |||   | |||||||| ||||||||||||    
T  44729311 gtgcacataaattccaaagcgtgtgtgggatacactaacctttatgttcaattcacccctgcgagttatgccaaccggatgcaa 44729228  T

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Target: scaffold0007 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 147 - 229
Target Start/End: Complemental strand, 217861 - 217778
Alignment:
Q  147 aatccttgacgtgacttgcacgttcacatcaagtgtatcga-caatggtagcttacaaaataaagttctgacaaattctctcgt 229  Q
    ||||||||| | ||||||||| |||||| |||||||||||| ||||||||| ||||||||||| |||||| ||| |||||||||    
T  217861 aatccttgaagagacttgcacattcacaccaagtgtatcgatcaatggtagtttacaaaataatgttctgccaatttctctcgt 217778  T

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Target: scaffold0007; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 217996 - 217956
Alignment:
Q  35 atgatgaagatgaacataatgaattgtgcacataaattcca 75  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  217996 atgatgaagatgaacataatgaatagtgcacataaattcca 217956  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 229
Target Start/End: Complemental strand, 11932066 - 11931984
Alignment:
Q  147 aatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgt 229  Q
    ||||||||| |||||||||   |||||| ||||| ||||||||||||||| ||| | |||||| ||||| |||||||||||||    
T  11932066 aatccttgatgtgacttgcttattcacaccaagtttatcgacaatggtagtttatagaataaaattctgtcaaattctctcgt 11931984  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 143
Target Start/End: Complemental strand, 11932187 - 11932104
Alignment:
Q  60 gtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaa 143  Q
    ||||||||||||| ||  || ||||| || ||||||||| |||| ||| ||||||||| ||| |||||||| ||||||||||||    
T  11932187 gtgcacataaatttcaaagcatgtgttggacacactaacctttaggtttgattcgcccccactagttatgccaaccggatgcaa 11932104  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 28611998 - 28612044
Alignment:
Q  26 atcaagaatatgatgaagatgaacataatgaattgtgcacataaatt 72  Q
    |||||||| |||||||| |||||||| ||||| ||||||||||||||    
T  28611998 atcaagaagatgatgaatatgaacatgatgaagtgtgcacataaatt 28612044  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 21937282 - 21937326
Alignment:
Q  28 caagaatatgatgaagatgaacataatgaattgtgcacataaatt 72  Q
    |||||| |||||||||||||| || ||||| ||||||||||||||    
T  21937282 caagaagatgatgaagatgaatatgatgaagtgtgcacataaatt 21937326  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 116
Target Start/End: Original strand, 48779718 - 48779799
Alignment:
Q  35 atgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgcc 116  Q
    ||||| ||||||||||| ||||| |||||| ||||||| ||  |||||||||||  |||||||| |||| ||||||||||||    
T  48779718 atgataaagatgaacatgatgaagtgtgcatataaatttcaaagcgtgtgtgggatacactaacctttatgttcgattcgcc 48779799  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 229
Target Start/End: Complemental strand, 20251523 - 20251439
Alignment:
Q  146 gaatccttgacgtgacttgcacgttcacatcaagtgtatcga-caatggtagcttacaaaataaagttctgacaaattctctcgt 229  Q
    ||||| |||| ||| |||| || ||||||||||||||||||| ||||| ||| ||||| |||||||||||| ||| |||||||||    
T  20251523 gaatcattgatgtgccttgtacattcacatcaagtgtatcgatcaatgatagtttacataataaagttctgtcaatttctctcgt 20251439  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 3415644 - 3415597
Alignment:
Q  28 caagaatatgatgaagatgaacataatgaattgtgcacataaattcca 75  Q
    |||||| ||||||||||||||||| ||||| |||||||||||||||||    
T  3415644 caagaagatgatgaagatgaacatgatgaagtgtgcacataaattcca 3415597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 3425192 - 3425145
Alignment:
Q  28 caagaatatgatgaagatgaacataatgaattgtgcacataaattcca 75  Q
    |||||| ||||||||||||||||| || || |||||||||||||||||    
T  3425192 caagaagatgatgaagatgaacatgataaagtgtgcacataaattcca 3425145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 264
Target Start/End: Complemental strand, 24391951 - 24391830
Alignment:
Q  141 caatagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaaga 240  Q
    |||| |||||||||  ||||||||||| | |||| |||  |||||||||||| ||| ||||| ||||||||| || ||| ||||||| | || ||| |||    
T  24391951 caatggaatccttggtgtgacttgcacat-cacaccaaacgtatcgacaatgatagtttacagaataaagttatgtcaatttctctcatgca-ctagaga 24391854  T
Q  241 agagaacgaataatttagtataat 264  Q
    | |||| |||| ||||||||||||    
T  24391853 aaagaaagaatgatttagtataat 24391830  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 32429778 - 32429731
Alignment:
Q  26 atcaagaatatgatgaagatgaacataatgaattgtgcacataaattc 73  Q
    |||||||  ||||||||||||||||| ||||| |||||||||||||||    
T  32429778 atcaagatgatgatgaagatgaacatgatgaagtgtgcacataaattc 32429731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 18670553 - 18670597
Alignment:
Q  28 caagaatatgatgaagatgaacataatgaattgtgcacataaatt 72  Q
    |||||| ||||| ||||||||||| ||||| ||||||||||||||    
T  18670553 caagaagatgataaagatgaacatgatgaagtgtgcacataaatt 18670597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 18736870 - 18736918
Alignment:
Q  27 tcaagaatatgatgaagatgaacataatgaattgtgcacataaattcca 75  Q
    ||||||| ||||| ||||||||| | ||||| |||||||||||||||||    
T  18736870 tcaagaagatgattaagatgaacttgatgaagtgtgcacataaattcca 18736918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 34681118 - 34681195
Alignment:
Q  158 tgacttgcacgttcacatcaagtgtatcga-caatggtagcttacaaaataaagttctgacaaattctctcgtacacc 234  Q
    |||||||||| ||||||||||| ||||||| ||||| ||| ||||  ||||||||| || ||| ||||||||| ||||    
T  34681118 tgacttgcacattcacatcaagcgtatcgatcaatgatagtttacgtaataaagttttgtcaatttctctcgttcacc 34681195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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